YRC Public Data Repository - Protein Structure Prediction

Protein:	PSIF_ECOLI
Organism:	Escherichia coli
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSIF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83585696, gi\|... - gi\|83585696\|ref\|ZP_00924338.1\| hypothetical protein Ecol1_01003112 [Escherichia coli 101-1], gi\|1944... gi\|253325678, gi... - gi\|254287253\|ref\|YP_003053001.1\| hypothetical protein ECD_00331 [Escherichia coli BL21(DE3)], gi\|253... gi\|242376161, gi... - gi\|251783888\|ref\|YP_002998192.1\| hypothetical protein B21_00335 [Escherichia coli BL21], gi\|24237616... gi\|253972351, gi... - gi\|254160450\|ref\|YP_003043558.1\| hypothetical protein ECB_00331 [Escherichia coli B str. REL606], gi... tr\|A0A0X8UGX6\|A0... - Uncharacterized protein OS=Escherichia coli (strain K12) GN=C3026_01860 PE=4 SV=1	135.0	[0..1]	[106..1]
gi\|213612762 - gi\|213612762\|ref\|ZP_03370588.1\| hypothetical protein SentesTyp_09759 [Salmonella enterica subsp. ent... gi\|213647683 - gi\|213647683\|ref\|ZP_03377736.1\| hypothetical protein SentesTy_10612 [Salmonella enterica subsp. ente... gi\|213852999 - gi\|213852999\|ref\|ZP_03382531.1\| hypothetical protein SentesT_09131 [Salmonella enterica subsp. enter... gi\|213979879 - gi\|213979879\|ref\|ZP_03407138.1\| hypothetical protein Salmonellaentericaenterica_37508 [Salmonella en... gi\|198242742, gi... - gi\|198242742\|ref\|YP_002214337.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... gi\|199602047, gi... - gi\|200389602\|ref\|ZP_03216213.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|213028378 - gi\|213028378\|ref\|ZP_03342825.1\| hypothetical protein Salmonelentericaenterica_41205 [Salmonella ente... gi\|213420448 - gi\|213420448\|ref\|ZP_03353514.1\| hypothetical protein Salmonentericaenterica_22958 [Salmonella enteri... gi\|238911483 - gi\|238911483\|ref\|ZP_04655320.1\| hypothetical protein SentesTe_10145 [Salmonella enterica subsp. ente... gi\|194450043, gi... - gi\|194450043\|ref\|YP_002044416.1\| hypothetical protein SeHA_C0481 [Salmonella enterica subsp. enteric... gi\|194470680, gi... - gi\|194470680\|ref\|ZP_03076664.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|197251519, gi... - gi\|197251519\|ref\|YP_002145364.1\| psiF repeat domain protein [Salmonella enterica subsp. enterica ser... gi\|197242462, gi... - gi\|197264207\|ref\|ZP_03164281.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|168240200, gi... - gi\|205340192\|gb\|EDZ26956.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|205349986, gi... - gi\|205349986\|gb\|EDZ36617.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|195631714, gi... - gi\|195631714\|gb\|EDX50234.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|194444632, gi... - gi\|194444632\|ref\|YP_002039623.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=psiF] [protein=hypothetical protein] [protein_id=YP_005236070.1] [location=438410..438730] gi\|62178995, gi\|... - gi\|62178995\|ref\|YP_215412.1\| hypothetical protein SC0425 [Salmonella enterica subsp. enterica serova... gi\|214002271 - gi\|214002271\|ref\|ZP_03413006.1\| hypothetical protein Salmonellentericaenterica_18512 [Salmonella ent... gi\|224466747, gi... - gi\|224582220\|ref\|YP_002636018.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... gi\|29142866, gi\|... - gi\|29142866\|ref\|NP_806208.1\| hypothetical protein t2480 [Salmonella enterica subsp. enterica serovar... gi\|16759362 - gi\|16759362\|ref\|NP_454979.1\| hypothetical protein STY0417 [Salmonella enterica subsp. enterica serov... gi\|16501653, gi\|... - gi\|25371759\|pir\|\|AG0549 phosphate starvation-inducible protein PsiF [imported] - Salmonella enterica... gi\|16418887, gi\|... - gi\|16763764\|ref\|NP_459379.1\| hypothetical protein STM0384 [Salmonella typhimurium LT2], gi\|16418887\|... gi\|161364799, gi... - gi\|161615435\|ref\|YP_001589400.1\| hypothetical protein SPAB_03206 [Salmonella enterica subsp. enteric... gi\|205323473, gi... - gi\|205323473\|gb\|EDZ11312.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|205329518, gi... - gi\|205329518\|gb\|EDZ16282.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|168232351, gi... - gi\|205333457\|gb\|EDZ20221.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ...	135.0	[0..1]	[106..1]
gi\|227838698, gi... - gi\|227884612\|ref\|ZP_04002417.1\| phosphate starvation-inducible protein PsiF [Escherichia coli 83972]... gi\|237707627, gi... - gi\|237707627\|ref\|ZP_04538108.1\| phosphate starvation-induced protein psiF [Escherichia sp. 3_2_53FAA... gi\|91071023, gi\|... - gi\|91209449\|ref\|YP_539435.1\| hypothetical protein UTI89_C0403 [Escherichia coli UTI89], gi\|91071023\|... gi\|25371754, gi\|... - pir\|\|H64766 phosphate starvation-induced protein psiF precursor - Escherichia coli (strain K-12), p... gi\|15829688, gi\|... - gi\|15829688\|ref\|NP_308461.1\| phosphate starvation-induced protein [Escherichia coli O157:H7], gi\|133... gi\|15829688, gi\|... - gi\|15829688\|ref\|NP_308461.1\| hypothetical protein ECs0434 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|26106784, gi\|... - gi\|26246386\|ref\|NP_752425.1\| hypothetical protein c0491 [Escherichia coli CFT073], gi\|26106784\|gb\|AA... gi\|110804405, gi... - gi\|110804405\|ref\|YP_687925.1\| hypothetical protein SFV_0347 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|15800110, gi\|... - gi\|15800110\|ref\|NP_286122.1\| hypothetical protein Z0480 [Escherichia coli O157:H7 EDL933], gi\|125132... gi\|16128369, gi\|... - gb\|AAC73487.1\| induced by phosphate starvation [Escherichia coli K12], gi\|16128369\|ref\|NP_414918.1\|... gi\|73854428, gi\|... - gi\|74310951\|ref\|YP_309370.1\| hypothetical protein SSON_0359 [Shigella sonnei Ss046], gi\|73854428\|gb\|... gi\|117622647, gi... - gi\|117622647\|ref\|YP_851560.1\| hypothetical protein APECO1_1624 [Escherichia coli APEC O1], gi\|115511... gi\|82542875, gi\|... - gi\|82542875\|ref\|YP_406822.1\| hypothetical protein SBO_0279 [Shigella boydii Sb227], gi\|81244286\|gb\|A... gi\|1657580\|gb\|AA... - phosphate starvation-inducible protein [Escherichia coli]	134.0	[0..1]	[106..7]
gi\|204927197, gi... - gi\|204927197\|ref\|ZP_03218399.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|197363382, gi... - gi\|197363382\|ref\|YP_002143019.1\| hypothetical protein SSPA2182 [Salmonella enterica subsp. enterica ... gi\|194736123, gi... - gi\|194736123\|ref\|YP_002113414.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... gi\|197289477, gi... - gi\|197289477\|gb\|EDY28840.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|56128718, gi\|... - gi\|56414461\|ref\|YP_151536.1\| hypothetical protein SPA2339 [Salmonella enterica subsp. enterica serov...	133.0	[0..1]	[106..1]
gi\|30040045, gi\|... - gi\|30061803\|ref\|NP_835974.1\| hypothetical protein S0251 [Shigella flexneri 2a str. 2457T], gi\|300400...	133.0	[0..1]	[106..7]
gi\|24111674, gi\|... - gi\|24111674\|ref\|NP_706184.1\| hypothetical protein SF0229 [Shigella flexneri 2a str. 301], gi\|2405045...	133.0	[0..1]	[106..7]
gi\|75256757, gi\|... - gi\|75256757\|ref\|ZP_00728362.1\| hypothetical protein EcolE2_01003330 [Escherichia coli E22], gi\|19306... gi\|75209941, gi\|... - gi\|75209941\|ref\|ZP_00710130.1\| hypothetical protein EcolB_01002885 [Escherichia coli B171], gi\|19442... gi\|157065583, gi... - gi\|75194604\|ref\|ZP_00704674.1\| hypothetical protein EcolH_01000383 [Escherichia coli HS], gi\|1571599...	133.0	[0..1]	[106..1]
gi\|48732216, gi\|... - gi\|77456802\|ref\|YP_346307.1\| PsiF [Pseudomonas fluorescens Pf0-1], gi\|77380805\|gb\|ABA72318.1\| phosph...	113.0	[0..1]	[104..1]
gi\|82775717, gi\|... - gi\|82775717\|ref\|YP_402064.1\| induced by phosphate starvation [Shigella dysenteriae Sd197], gi\|812398...	109.0	[0..1]	[85..7]
gi\|95112821 - gi\|95112821\|emb\|CAK17549.1\| protein induced by phosphate starvation [Pseudomonas entomophila L48] gi\|104783834, gi... - gi\|95112821\|emb\|CAK17549.1\| protein induced by phosphate starvation [Pseudomonas entomophila L48], g...	109.0	[0..1]	[104..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITLLVTLL FGLVFLTTVG AAERTLTPQQ QRMTSCNQQA TAQALKGDAR KTYMSDCLKN  60
   61 SKSAPGEKSL TPQQQKMREC NNQATQQSLK GDDRNKFMSA CLKKAA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits