YRC Public Data Repository - Protein Structure Prediction

Protein:	PSD_COXBU
Organism:	Coxiella burnetii
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD_COXBU.

Description	E-value	Query Range	Subject Range
PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus GN=psd PE=3 SV=1 PSD_VIBVY - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain YJ016) GN=psd PE=3 SV=1 PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain CMCP6) GN=psd PE=3 SV=1	356.0	[0..2]	[275..6]
PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus GN=psd PE=3 SV=1 PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22...	354.0	[0..2]	[274..6]
PSD_VIBCM - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain M66-2) GN=psd PE=3... gi\|121591588, gi... - gi\|121591588\|ref\|ZP_01678841.1\| phosphatidylserine decarboxylase [Vibrio cholerae 2740-80], gi\|12154... gi\|229506866, gi... - gi\|229506866\|ref\|ZP_04396374.1\| phosphatidylserine decarboxylase [Vibrio cholerae BX 330286], gi\|229... PSD_VIBCH - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae GN=psd PE=3 SV=1 gi\|153823996, gi... - gi\|229508671\|ref\|ZP_04398165.1\| phosphatidylserine decarboxylase [Vibrio cholerae B33], gi\|229354306... gi\|229516053, gi... - gi\|229516053\|ref\|ZP_04405504.1\| phosphatidylserine decarboxylase [Vibrio cholerae RC9], gi\|229346956... gi\|229606380, gi... - gi\|229606380\|ref\|YP_002877028.1\| phosphatidylserine decarboxylase [Vibrio cholerae MJ-1236], gi\|2293... PSD_VIBCH - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El To... PSD_VIBC3 - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Class... gi\|254847354, gi... - gi\|75829152\|ref\|ZP_00758466.1\| COG0688: Phosphatidylserine decarboxylase [Vibrio cholerae MO10], gi\|... gi\|75814208 - gi\|75814208\|ref\|ZP_00744831.1\| COG0688: Phosphatidylserine decarboxylase [Vibrio cholerae V52]	353.0	[0..2]	[275..6]
gi\|218708315, gi... - gi\|218708315\|ref\|YP_002415936.1\| phosphatidylserine decarboxylase [Vibrio splendidus LGP32], gi\|2183... gi\|85834928, gi\|... - gi\|86147213\|ref\|ZP_01065528.1\| phosphatidylserine decarboxylase [Vibrio sp. MED222], gi\|85834928\|gb\|...	351.0	[0..2]	[281..6]
gi\|84378255, gi\|... - gi\|84386965\|ref\|ZP_00989989.1\| phosphatidylserine decarboxylase [Vibrio splendidus 12B01], gi\|843782...	351.0	[0..2]	[276..6]
PSD_PSEF5 - Phosphatidylserine decarboxylase proenzyme OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) G...	350.0	[0..5]	[274..10]
PSD_PHOPR - Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum GN=psd PE=3 SV=1 PSD_PHOPR - Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum (strain SS9) GN=psd PE=3 SV=1	350.0	[0..4]	[280..9]
gi\|91228389, gi\|... - gi\|91228389\|ref\|ZP_01262315.1\| phosphatidylserine decarboxylase [Vibrio alginolyticus 12G01], gi\|911...	350.0	[0..2]	[274..6]
gi\|238910509 - gi\|238910509\|ref\|ZP_04654346.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... PSD_SALEP - Phosphatidylserine decarboxylase proenzyme OS=Salmonella enteritidis PT4 (strain P125109) GN=psd PE=... PSD_SALG2 - Phosphatidylserine decarboxylase proenzyme OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=... gi\|204926953, gi... - gi\|204926953\|ref\|ZP_03218155.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALPB - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... PSD_SALDC - Phosphatidylserine decarboxylase proenzyme OS=Salmonella dublin (strain CT_02021853) GN=psd PE=3 SV=... gi\|213428682 - gi\|213428682\|ref\|ZP_03361432.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALPB - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... gi\|213052290 - gi\|213052290\|ref\|ZP_03345168.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis GN=psd PE=3 SV=1 PSD_SALPA - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A GN=psd PE=3 SV=1 lcl\|NC_016856.1_... - [gene=psd] [protein=phosphatidylserine decarboxylase] [protein_id=YP_005240663.1] [location=compleme... PSD_SALNS - Phosphatidylserine decarboxylase proenzyme OS=Salmonella newport (strain SL254) GN=psd PE=3 SV=1 gi\|195630622, gi... - gi\|195630622\|gb\|EDX49234.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|205347968, gi... - gi\|205347968\|gb\|EDZ34599.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|205336305, gi... - gi\|205336305\|gb\|EDZ23069.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis (strain SC-B67) GN=psd PE=3 SV... PSD_SALPK - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A (strain AKU_12601) GN=psd PE=3 ... PSD_SALPA - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=... gi\|197240792, gi... - gi\|197262537\|ref\|ZP_03162611.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALSV - Phosphatidylserine decarboxylase proenzyme OS=Salmonella schwarzengrund (strain CVM19633) GN=psd PE=... PSD_SALHS - Phosphatidylserine decarboxylase proenzyme OS=Salmonella heidelberg (strain SL476) GN=psd PE=3 SV=1 PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium GN=psd PE=3 SV=1 PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis GN=psd PE=3 SV=1 PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium GN=psd PE=3 SV=1 gi\|197289990, gi... - gi\|197289990\|gb\|EDY29349.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|167994768, gi... - gi\|205327414\|gb\|EDZ14178.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se...	349.0	[0..3]	[282..8]
gi\|213608041 - gi\|213608041\|ref\|ZP_03368867.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... gi\|29140288, gi\|... - gi\|29144649\|ref\|NP_807991.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica s... PSD_SALTI - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhi GN=psd PE=3 SV=1 gi\|16763170 - gi\|16763170\|ref\|NP_458787.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica s... PSD_SALTI - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhi GN=psd PE=3 SV=1 gi\|213982193 - gi\|213982193\|ref\|ZP_03409452.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... gi\|213850083 - gi\|213850083\|ref\|ZP_03380981.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... gi\|214003370 - gi\|214003370\|ref\|ZP_03414105.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric...	348.0	[0..3]	[282..8]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKLHKYLPQ RTLSKIVGWL ATREWGLLTQ WAIRLFIRHY GINMQEAQYP DIGHYPSFNA  60
   61 FFTRYLKR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELRPVVEEPR AIASPVDGII SEMGQIKGEN LIQAKNHHYT ITALLGEDPS RASQFLDGDF  60
   61 FTAYLAPKNY HRIHMPLDGR LIEMIHIPGK LFSVNPASVQ TVPRLFARNE RAVCLFETEN 120
  121 GLMAVILVGA MLVGSINTVW HGTVVPTAEG IAVHNYREKN IKFKRGEEIG HFKMGSTVIL 180
  181 LFPKNTIQWN PNCQPKGTIC YGENIGTVSL IEVA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	2gprA
Description:	GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.674366586819828	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: