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View Structure Prediction Details

Protein: PRRP_SHEEP
Organism: Ovis aries
Length: 98 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRRP_SHEEP.

Description E-value Query
Range
Subject
Range
PRRP_BOVIN - Prolactin-releasing peptide OS=Bos taurus GN=PRLH PE=1 SV=1
120.0 [0..23] [98..23]
PRLH - prolactin releasing hormone
115.0 [0..1] [85..1]
gi|82881160, gi|... - gi|94365377|ref|XP_985109.1| PREDICTED: similar to prolactin releasing hormone [Mus musculus], gi|82...
106.0 [0..20] [86..19]
gi|109101599 - gi|109101599|ref|XP_001084860.1| PREDICTED: similar to prolactin releasing hormone [Macaca mulatta]
106.0 [0..1] [85..1]
gi|73994200 - gi|73994200|ref|XP_848794.1| PREDICTED: similar to prolactin releasing hormone [Canis familiaris]
105.0 [0..19] [86..19]
gi|87242615 - gi|87242615|gb|ABD33839.1| prolactin-releasing peptide C-RFamide precursor [Cyprinus carpio]
92.0 [0..6] [64..23]
PRRP_RAT - Prolactin-releasing peptide OS=Rattus norvegicus GN=Prlh PE=2 SV=1
92.0 [0..20] [85..19]
gi|112821186 - gi|112821186|dbj|BAF03223.1| prolactin-releasing peptide [Xenopus laevis]
91.0 [0..9] [69..24]
gi|4587205 - gi|4587205|dbj|BAA76662.1| C-RF amide precursor [Carassius auratus]
85.0 [0..6] [64..23]
gi|50732896 - gi|50732896|ref|XP_418816.1| PREDICTED: similar to C-RF amide precursor [Gallus gallus]
76.0 [0..23] [72..176]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVGAWLLC LLLLGLALQG AASRAHQHSM EIRTPDINPA WYAGRGIRPV GRFGRRRAAP  60
   61 GDGPRPGPRR ELACIPLEGG AEPSRALLGR LTAQLVQE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.399 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.399 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.296 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.296 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.264 a.4.5 "Winged helix" DNA-binding domain
View Download 0.260 a.60.8 HRDC-like
View Download 0.244 a.60.8 HRDC-like
View Download 0.213 c.23.1 CheY-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle