YRC Public Data Repository - Protein Structure Prediction

Protein:	APRR2_ARATH
Organism:	Arabidopsis thaliana
Length:	535 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APRR2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|39998006, gi\|... - gi\|39998006\|ref\|NP_953957.1\| sigma-54 dependent DNA-binding response regulator [Geobacter sulfurredu...	255.0	[0..21]	[398..1]
gi\|78221776, gi\|... - gi\|78221776\|ref\|YP_383523.1\| two component, sigma54 specific, Fis family transcriptional regulator [...	254.0	[0..21]	[398..1]
gi\|78220448, gi\|... - gi\|78358043\|ref\|YP_389492.1\| two component Fis family transcriptional regulator [Desulfovibrio desul...	254.0	[0..22]	[405..1]
gi\|77546022, gi\|... - gi\|77919939\|ref\|YP_357754.1\| two component signal transduction response regulator [Pelobacter carbin...	253.0	[0..24]	[367..2]
gi\|116749722, gi... - gi\|71544341\|ref\|ZP_00665379.1\| Helix-turn-helix, Fis-type [Syntrophobacter fumaroxidans MPOB], gi\|71...	250.0	[0..21]	[396..1]
gi\|88918129, gi\|... - gi\|88935052\|ref\|ZP_01140689.1\| Helix-turn-helix, Fis-type [Geobacter uraniumreducens Rf4], gi\|889181...	249.0	[0..21]	[398..1]
gi\|118581482, gi... - gi\|71839762\|ref\|ZP_00679504.1\| Helix-turn-helix, Fis-type [Pelobacter propionicus DSM 2379], gi\|7173...	248.0	[0..25]	[393..5]
gi\|67981225, gi\|... - gi\|95931004\|ref\|ZP_01313732.1\| two component, sigma54 specific, transcriptional regulator, Fis famil...	247.0	[0..21]	[398..1]

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Predicted Domain #1

Region A:
Residues: [1-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVITANDLSK WENFPKGLKV LLLLNGCDSD GDGSSAAETR SELESMDYIV TTFTDETEAL  60
   61 SAVVKNPESF HIAIVEVNMS AESESFKFLE AAKDVLPTIM ISTDHCITTT MKCIALGAVE 120
  121 FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP 180
  181 STPQLKQDSR LLDGDCQENI NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV 240
  241 VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD 300
  301 WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH 360
  361 NHRWIQSREN HRPNQRNYNV F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	1ny5A
Description:	Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [382-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQQHRPVMAY PVWGLPGVYP PGAIPPLWPP PLQSIGQPPP WHWKPPYPTV SGNAWGCPVG  60
   61 PPVTGSYITP SNTTAGGFQY PNGAETG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [469-535]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKIMPASQPD EEMLDQVVKE AISKPWLPLP LGLKPPSAES VLAELTRQGI SAVPSSSCLI  60
   61 NGSHRLR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.984
Match:	1vk1A
Description:	Conserved hypothetical protein from Pyrococcus furiosus Pfu-392566-001
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits