YRC Public Data Repository - Protein Structure Prediction

Protein:	PRPE_ECOLI
Organism:	Escherichia coli
Length:	628 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRPE_ECOLI.

Description	E-value	Query Range	Subject Range
ACSA_LEPIC - Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenha... ACSA_LEPIC - Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenha...	643.0	[0..2]	[628..30]
gi\|78044614, gi\|... - gi\|78044614\|ref\|YP_359514.1\| acetyl-CoA synthetase [Carboxydothermus hydrogenoformans Z-2901], gi\|77...	643.0	[0..6]	[628..32]
ACSA_LEPIN - Acetyl-coenzyme A synthetase OS=Leptospira interrogans GN=acsA PE=3 SV=1 ACSA_LEPIN - Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (st...	642.0	[0..2]	[628..30]
ACSA_SYNFM - Acetyl-coenzyme A synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=acsA PE=3 ...	639.0	[0..2]	[624..22]
ACSA_XANP2 - Acetyl-coenzyme A synthetase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=acsA PE=3...	638.0	[0..3]	[623..23]
ACSA_LEPBL - Acetyl-coenzyme A synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=acsA...	638.0	[0..2]	[628..23]
ACSA_LEPBJ - Acetyl-coenzyme A synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=acs...	637.0	[0..2]	[628..23]
gi\|48763827 - ref\|ZP_00268380.1\| COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Rhodospirillum rub... gi\|83577818, gi\|... - gi\|83594904\|ref\|YP_428656.1\| acetyl-coenzyme A synthetase [Rhodospirillum rubrum ATCC 11170], gi\|835...	635.0	[0..3]	[624..24]
gi\|85713170, gi\|... - gi\|85713170\|ref\|ZP_01044201.1\| AMP-(fatty) acid ligase [Idiomarina baltica OS145], gi\|85692994\|gb\|EA...	633.0	[0..2]	[624..21]
ACSA_RHILO - Acetyl-coenzyme A synthetase OS=Rhizobium loti GN=acsA PE=3 SV=1 ACSA_RHILO - Acetyl-coenzyme A synthetase OS=Rhizobium loti (strain MAFF303099) GN=acsA PE=3 SV=1	633.0	[0..2]	[624..23]

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Predicted Domain #1

Region A:
Residues: [1-628]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSEFYQRS INEPEQFWAE QARRIDWQTP FTQTLDHSNP PFARWFCEGR TNLCHNAIDR  60
   61 WLEKQPEALA LIAVSSETEE ERTFTFRQLH DEVNAVASML RSLGVQRGDR VLVYMPMIAE 120
  121 AHITLLACAR IGAIHSVVFG GFASHSVAAR IDDAKPVLIV SADAGARGGK IIPYKKLLDD 180
  181 AISQAQHQPR HVLLVDRGLA KMARVSGRDV DFASLRHQHI GARVPVAWLE SNETSCILYT 240
  241 SGTTGKPKGV QRDVGGYAVA LATSMDTIFG GKAGSVFFCA SDIGWVVGHS YIVYAPLLAG 300
  301 MATIVYEGLP TWPDCGVWWT IVEKYQVSRM FSAPTAIRVL KKFPTAEIRK HDLSSLEVLY 360
  361 LAGEPLDEPT ASWVSNTLDV PVIDNYWQTE SGWPIMAIAR GLDDRPTRLG SPGVPMYGYN 420
  421 VQLLNEVTGE PCGVNEKGML VVEGPLPPGC IQTIWGDDGR FVKTYWSLFS RPVYATFDWG 480
  481 IRDADGYHFI LGRTDDVINV AGHRLGTREI EESISSHPGV AEVAVVGVKD ALKGQVAVAF 540
  541 VIPKESDSLE DRDVAHSQEK AIMALVDSQI GNFGRPAHVW FVSQLPKTRS GKMLRRTIQA 600
  601 ICEGRDPGDL TTIDDPASLD QIRQAMEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	180.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits