YRC Public Data Repository - Protein Structure Prediction

Protein:	PROV_ECOLI
Organism:	Escherichia coli
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110806690, gi... - gi\|110806690\|ref\|YP_690210.1\| glycine betaine transporter ATP-binding subunit [Shigella flexneri 5 s...	395.0	[0..1]	[400..68]
gi\|75241626, gi\|... - gi\|75241626\|ref\|ZP_00725463.1\| COG4175: ABC-type proline/glycine betaine transport system, ATPase co... gi\|218366438, gi... - gi\|218559669\|ref\|YP_002392582.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli S... gi\|91073612, gi\|... - gi\|91212038\|ref\|YP_542024.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli UTI89... gi\|110344395, gi... - gi\|110642803\|ref\|YP_670533.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli 536]... gi\|218706177, gi... - gi\|218706177\|ref\|YP_002413696.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli U... gi\|26109479, gi\|... - gi\|26249072\|ref\|NP_755112.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli CFT07... gi\|227888211, gi... - gi\|227888211\|ref\|ZP_04006016.1\| quaternary-amine-transporting ATPase [Escherichia coli 83972], gi\|22... gi\|117624913, gi... - gi\|117624913\|ref\|YP_853854.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli APEC...	388.0	[0..1]	[400..1]
gi\|74313248, gi\|... - gi\|74313248\|ref\|YP_311667.1\| glycine betaine transporter ATP-binding subunit [Shigella sonnei Ss046]...	388.0	[0..1]	[400..1]
gi\|209762230, gi... - pir\|\|G85915 hypothetical protein proV [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|254794624, gi... - gi\|254794624\|ref\|YP_003079461.1\| glycine betaine transporter subunit, ATP-binding component of ABC s... gi\|12517116, gi\|... - gi\|15803197\|ref\|NP_289229.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli O157:... gi\|13363011, gi\|... - gi\|15832794\|ref\|NP_311567.1\| ATP-binding component of glycine betaine/proline transport system [Esch... gi\|168750920, gi... - gi\|188014974\|gb\|EDU53096.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Escheric... gi\|209398437, gi... - gi\|209398437\|ref\|YP_002272143.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Esc... gi\|208818504, gi... - gi\|208818504\|ref\|ZP_03258824.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Esch... gi\|208813110, gi... - gi\|208813110\|ref\|ZP_03254439.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Esch... gi\|208808715, gi... - gi\|208808715\|ref\|ZP_03251052.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Esch... gi\|217327931, gi... - gi\|217327931\|ref\|ZP_03444014.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Esch... gi\|187769636, gi... - gi\|187769636\|gb\|EDU33480.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Escheric... gi\|168768768, gi... - gi\|189362130\|gb\|EDU80549.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Escheric... gi\|189367296, gi... - gi\|189367296\|gb\|EDU85712.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Escheric... gi\|168755422, gi... - gi\|189357282\|gb\|EDU75701.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Escheric... gi\|13363011, gi\|... - gi\|15832794\|ref\|NP_311567.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli O157:... gi\|195938431 - gi\|195938431\|ref\|ZP_03083813.1\| glycine betaine transporter ATP-binding subunit [Escherichia coli O1... gi\|189377168, gi... - gi\|189377168\|gb\|EDU95584.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Escheric... gi\|189372169, gi... - gi\|189372169\|gb\|EDU90585.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Escheric... gi\|168778659, gi... - gi\|189003308\|gb\|EDU72294.1\| glycine betaine/L-proline ABC transporter, ATP binding protein [Escheric...	387.0	[0..1]	[400..1]
gi\|188493089, gi... - gi\|75513248\|ref\|ZP_00735690.1\| COG4175: ABC-type proline/glycine betaine transport system, ATPase co...	387.0	[0..1]	[400..1]
gi\|56480160, gi\|... - gi\|56480160\|ref\|NP_708491.2\| glycine betaine transporter ATP-binding subunit [Shigella flexneri 2a s... gi\|30042300, gi\|... - gi\|30064044\|ref\|NP_838215.1\| glycine betaine transporter ATP-binding subunit [Shigella flexneri 2a s...	387.0	[0..1]	[400..1]
gi\|75234106, gi\|... - gi\|75234106\|ref\|ZP_00718517.1\| COG4175: ABC-type proline/glycine betaine transport system, ATPase co...	387.0	[0..1]	[400..1]
gi\|75229758, gi\|... - gi\|75229758\|ref\|ZP_00716288.1\| COG4175: ABC-type proline/glycine betaine transport system, ATPase co...	387.0	[0..1]	[400..1]
gi\|157162128, gi... - gi\|75196658\|ref\|ZP_00706728.1\| COG4175: ABC-type proline/glycine betaine transport system, ATPase co...	386.0	[0..1]	[400..1]
gi\|83569961, gi\|... - gi\|83569961\|ref\|ZP_00921409.1\| COG4175: ABC-type proline/glycine betaine transport system, ATPase co...	386.0	[0..1]	[400..1]

Back

Predicted Domain #1

Region A:
Residues: [1-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKLEIKNL YKIFGEHPQR AFKYIEQGLS KEQILEKTGL SLGVKDASLA IEEGEIFVIM  60
   61 GLSGSGKSTM VRLLNRLIEP TRGQVLIDGV DIAKISDAEL REVRRKKIAM VFQSFALMPH 120
  121 MTVLDNTAFG MELAGINAEE RREKALDALR QVGLENYAHS YPDELSGGMR QRVGLARALA 180
  181 INPDILLMDE AFSALDPLIR TEMQDELVKL QAKHQRTIVF ISHDLDEAMR IGDRIAIMQN 240
  241 GEVVQVGTPD EILNNPANDY VRTFFRGVDI SQVFSAKDIA RRTPNGLIRK TPGFGPRSAL 300
  301 KLLQDEDREY GYVIERGNKF VGAVSIDSLK TALTQQQGLD AALIDAPLAV DAQTPLSELL 360
  361 SHVGQAPCAV PVVDEDQQYV GIISKGMLLR ALDREGVNNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits