YRC Public Data Repository - Protein Structure Prediction

Protein:	ttx-7
Organism:	Caenorhabditis elegans
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ttx-7.

Description	E-value	Query Range	Subject Range
gi\|160875618, gi... - gi\|160875618\|ref\|YP_001554934.1\| inositol-phosphate phosphatase [Shewanella baltica OS195], gi\|16086... gi\|151365528, gi... - gi\|153000910\|ref\|YP_001366591.1\| inositol-phosphate phosphatase [Shewanella baltica OS185], gi\|15136... gi\|217973133, gi... - gi\|217973133\|ref\|YP_002357884.1\| Inositol-phosphate phosphatase [Shewanella baltica OS223], gi\|21749... gi\|68518682, gi\|... - gi\|68543638\|ref\|ZP_00583336.1\| Inositol-1(or 4)-monophosphatase [Shewanella baltica OS155], gi\|68518...	293.0	[0..10]	[280..1]
gi\|145564939, gi... - gi\|77815058\|ref\|ZP_00814301.1\| Inositol-1(or 4)-monophosphatase [Shewanella putrefaciens CN-32], gi\|... gi\|124508941, gi... - gi\|124547819\|ref\|ZP_01706644.1\| inositol monophosphatase [Shewanella putrefaciens 200], gi\|124508941... gi\|120598673, gi... - gi\|120598673\|ref\|YP_963247.1\| inositol-phosphate phosphatase [Shewanella sp. W3-18-1], gi\|120558766\|...	293.0	[0..10]	[280..1]
gi\|78688379, gi\|... - gi\|78688379\|ref\|ZP_00853076.1\| Inositol-1(or 4)-monophosphatase [Shewanella sp. ANA-3], gi\|78503883\|... gi\|113884757, gi... - gi\|82496763\|ref\|ZP_00882327.1\| Inositol-1(or 4)-monophosphatase [Shewanella sp. MR-4], gi\|82405172\|g...	292.0	[0..10]	[280..1]
gi\|113888756, gi... - gi\|78692445\|ref\|ZP_00856968.1\| Inositol-1(or 4)-monophosphatase [Shewanella sp. MR-7], gi\|78508153\|g...	292.0	[0..10]	[280..1]
gi\|24348211, gi\|... - gi\|24373813\|ref\|NP_717856.1\| extragenic suppressor protein SuhB [Shewanella oneidensis MR-1], gi\|243... SO2260 - extragenic suppressor protein SuhB	290.0	[0..10]	[280..1]
gi\|56315147, gi\|... - gi\|56479104\|ref\|YP_160693.1\| inositol monophosphatase (extragenic suppressor protein) [Aromatoleum a...	289.0	[0..10]	[277..1]
gi\|52425784, gi\|... - gi\|52425784\|ref\|YP_088921.1\| SuhB protein [Mannheimia succiniciproducens MBEL55E], gi\|52307836\|gb\|AA...	289.0	[0..6]	[276..1]
SUHB_PASMU - Inositol-1-monophosphatase OS=Pasteurella multocida (strain Pm70) GN=suhB PE=3 SV=1 SUHB_PASMU - Inositol-1-monophosphatase OS=Pasteurella multocida GN=suhB PE=3 SV=1	289.0	[0..10]	[275..1]
gi\|77359290, gi\|... - gi\|77359290\|ref\|YP_338865.1\| inositol-1-monophosphatase [Pseudoalteromonas haloplanktis TAC125], gi\|...	289.0	[0..10]	[279..1]
gi\|212218568, gi... - gi\|212218568\|ref\|YP_002305355.1\| myo-inositol-1(or 4)-monophosphatase [Coxiella burnetii CbuK_Q154],... gi\|207081940, gi... - gi\|209364007\|ref\|YP_001424591.2\| myo-inositol-1(or 4)-monophosphatase [Coxiella burnetii Dugway 5J10... gi\|94491912 - gi\|94491912\|ref\|ZP_01299121.1\| hypothetical protein CburD_01000799 [Coxiella burnetii Dugway 7E9-12]	289.0	[0..10]	[275..2]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFQPIHEEE QVFVDYAIEL VKKAGTLVRT AFDSPESKVD TKSSNTDLVT ETDQAVEKLL  60
   61 IEGLSERFKG HRFIGEESVA GGAKIEWTDA PTWIIDPIDG TTNFVHRIPM IAICVGLAIK 120
  121 KQIRAGIVYN PITNELYLAQ LGKGAFKNGF PIRASKNQFI AESVLILQLG SIRSPVMQKS 180
  181 FVDSYKTVMF DKQCHGHRSF GSGAINMVMV AQGSCDGYVE YGIHAWDVAA PSIIVTEAGG 240
  241 VVTDPTGSPF DVMSRKVLCA GTAELGRDLS ACLTHVDFEP EA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.221849
Match:	1imaA
Description:	Inositol monophosphatase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits