YRC Public Data Repository - Protein Structure Prediction

Protein:	PQQD_RAHAQ
Organism:	Rahnella aquatilis
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PQQD_RAHAQ.

Description	E-value	Query Range	Subject Range
PQQD_PSEA7 - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain PA7) GN=pqqD PE=3 SV=1	128.0	[0..1]	[92..1]
PQQD_PSEAB - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pqqD PE=3 SV=1 PQQD_PSEA8 - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain LESB58) GN=pqqD PE=3 SV=1 PQQD_PSEAE - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 ... gi\|107101416 - gi\|107101416\|ref\|ZP_01365334.1\| hypothetical protein PaerPA_01002456 [Pseudomonas aeruginosa PACS2] PQQD_PSEAE - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa GN=pqqD PE=3 SV=1 gi\|126167003, gi... - gi\|84321446\|ref\|ZP_00969804.1\| hypothetical protein PaerC_01000976 [Pseudomonas aeruginosa C3719], g...	127.0	[0..1]	[92..1]
gi\|194551410, gi... - gi\|84327661\|ref\|ZP_00975678.1\| hypothetical protein Paer2_01001096 [Pseudomonas aeruginosa 2192], gi...	126.0	[0..1]	[92..1]
gi\|82738185, gi\|... - gi\|82738185\|ref\|ZP_00901023.1\| coenzyme PQQ synthesis protein D [Pseudomonas putida F1], gi\|82714792...	125.0	[0..2]	[92..8]
gi\|95108660 - gi\|95108660\|emb\|CAK13354.1\| coenzyme PQQ synthesis protein D (Coenzyme PQQ synthesis protein II) [Ps... PQQD_PSEE4 - Coenzyme PQQ synthesis protein D OS=Pseudomonas entomophila (strain L48) GN=pqqD PE=3 SV=1	125.0	[0..2]	[92..1]
gi\|59891640 - gi\|59891640\|gb\|AAX10037.1\| pyrroloquinoline quinone biosynthesis protein D [Pseudomonas fluorescens]	125.0	[0..2]	[92..1]
gi\|67088389, gi\|... - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP], gi\|67088389\|g... gi\|67154256 - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP]	125.0	[0..1]	[91..3]
gi\|113196162 - gi\|113196162\|gb\|ABI31436.1\| PqqD [Serratia marcescens]	124.0	[0..2]	[93..1]
PQQD1_PSEPK - Coenzyme PQQ synthesis protein D 1 OS=Pseudomonas putida (strain KT2440) GN=pqqD1 PE=3 SV=1 tr\|E4RE10\|E4RE10... - Coenzyme PQQ synthesis protein D OS=Pseudomonas putida (strain BIRD-1) GN=pqqD PE=3 SV=1	123.0	[0..2]	[92..1]
PQQD_PSEF5 - Coenzyme PQQ synthesis protein D OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pqqD PE=...	123.0	[0..2]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITITEHYTP MFRRGYRMQF EKTQDCHVIL YPEGMAKLND SATFILQLVD GERTIANIID  60
   61 ELNERFPEAG GVNDDVKDFF AQAHAQKWIT FREPA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.387216
Match:	PF05402.3
Description:	No description for PF05402.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.880	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits