YRC Public Data Repository - Protein Structure Prediction

Protein:	PQIB_ECOLI
Organism:	Escherichia coli
Length:	546 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PQIB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26246972, gi\|... - gi\|26246972\|ref\|NP_753012.1\| paraquat-inducible protein B [Escherichia coli CFT073], gi\|26107372\|gb\|...	540.0	[0..1]	[546..21]
gi\|91071620, gi\|... - gi\|91210046\|ref\|YP_540032.1\| paraquat-inducible protein B [Escherichia coli UTI89], gi\|91071620\|gb\|A... gi\|226898276, gi... - gi\|237707066\|ref\|ZP_04537547.1\| paraquat-inducible protein B [Escherichia sp. 3_2_53FAA], gi\|2268982...	539.0	[0..1]	[546..21]
gi\|75214449 - gi\|75214449\|ref\|ZP_00713053.1\| COG3008: Paraquat-inducible protein B [Escherichia coli E110019]	539.0	[0..1]	[546..2]
gi\|82544725, gi\|... - gi\|82544725\|ref\|YP_408672.1\| paraquat-inducible protein B [Shigella boydii Sb227], gi\|81246136\|gb\|AB...	538.0	[0..1]	[546..1]
gi\|188493783, gi... - gi\|75510994\|ref\|ZP_00733748.1\| COG3008: Paraquat-inducible protein B [Escherichia coli 53638], gi\|18...	538.0	[0..1]	[546..1]
gi\|187731372, gi... - gi\|75178235\|ref\|ZP_00698289.1\| COG3008: Paraquat-inducible protein B [Shigella boydii BS512], gi\|187...	538.0	[0..1]	[546..1]
gi\|117623162, gi... - gi\|117623162\|ref\|YP_852075.1\| paraquat-inducible protein B [Escherichia coli APEC O1], gi\|115512286\|...	538.0	[0..1]	[546..7]
gi\|168758977, gi... - gi\|189354323\|gb\|EDU72742.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|189359577, gi... - gi\|189359577\|gb\|EDU77996.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|254792151, gi... - gi\|254792151\|ref\|YP_003076988.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. TW14359... gi\|209399494, gi... - gi\|209399494\|ref\|YP_002269620.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. EC4115]... gi\|209774506, gi... - pir\|\|A85622 paraquat-inducible protein B [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|12514133, gi\|... - gi\|15800810\|ref\|NP_286826.1\| paraquat-inducible protein B [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|13360495, gi\|... - gi\|15830289\|ref\|NP_309062.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168776194, gi... - gi\|187768348\|gb\|EDU32192.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|13360495, gi\|... - gi\|15830289\|ref\|NP_309062.1\| paraquat-inducible protein B [Escherichia coli O157:H7], gi\|13360495\|db... gi\|188998765, gi... - gi\|188998765\|gb\|EDU67751.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|189372627, gi... - gi\|189372627\|gb\|EDU91043.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|208731994, gi... - gi\|208815346\|ref\|ZP_03256525.1\| paraquat-inducible protein B [Escherichia coli O157:H7 str. EC4045],...	538.0	[0..1]	[546..1]
gi\|56479780, gi\|... - gi\|56479780\|ref\|NP_706874.2\| paraquat-inducible protein B [Shigella flexneri 2a str. 301], gi\|563833... gi\|209774504 - gi\|209774504\|gb\|ACI85564.1\| paraquat-inducible protein B [Escherichia coli] gi\|110641140, gi... - gi\|110641140\|ref\|YP_668870.1\| paraquat-inducible protein B [Escherichia coli 536], gi\|110342732\|gb\|A... gi\|110804967, gi... - gi\|110804967\|ref\|YP_688487.1\| paraquat-inducible protein B [Shigella flexneri 5 str. 8401], gi\|11061... gi\|30062488, gi\|... - gi\|30062488\|ref\|NP_836659.1\| paraquat-inducible protein B [Shigella flexneri 2a str. 2457T], gi\|3004... gi\|170683101, gi... - gi\|170683101\|ref\|YP_001744218.1\| paraquat-inducible protein B [Escherichia coli SMS-3-5], gi\|1705208... gi\|83568923 - gi\|83568923\|ref\|ZP_00920391.1\| COG3008: Paraquat-inducible protein B [Shigella dysenteriae 1012] gi\|190907600, gi... - gi\|75241019\|ref\|ZP_00724908.1\| COG3008: Paraquat-inducible protein B [Escherichia coli F11], gi\|1911... gi\|218700530, gi... - gi\|218700530\|ref\|YP_002408159.1\| paraquat-inducible protein B [Escherichia coli IAI39], gi\|218370516... gi\|82776242, gi\|... - gi\|82776242\|ref\|YP_402591.1\| paraquat-inducible protein B [Shigella dysenteriae Sd197], gi\|81240390\|... gi\|218704374, gi... - gi\|218704374\|ref\|YP_002411893.1\| paraquat-inducible protein B [Escherichia coli UMN026], gi\|21843147...	537.0	[0..1]	[546..1]
gi\|74311508, gi\|... - gi\|74311508\|ref\|YP_309927.1\| paraquat-inducible protein B [Shigella sonnei Ss046], gi\|73854985\|gb\|AA...	535.0	[0..1]	[546..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNNGEAKI QKVKNWSPVW IFPIVTALIG AWVLFYHYSH QGPEVTLITA NAEGIEGGKT  60
   61 TIKSRSVDVG VVESATLADD LTHVEIKARL NSGMEKLLHK DTVFWVVKPQ IGREGISGLG 120
  121 TLLSGVYIEL QPGAKGSKMD KYDLLDS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.853872
Match:	PF02470.11
Description:	No description for PF02470.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.613	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.610	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.595	N/A	N/A	b.55.1	PH domain-like
View	Download	0.559	N/A	N/A	d.20.1	UBC-like
View	Download	0.465	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.452	N/A	N/A	d.20.1	UBC-like
View	Download	0.447	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.437	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.410	N/A	N/A	b.1.18	E set domains
View	Download	0.410	N/A	N/A	b.1.18	E set domains
View	Download	0.363	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.266	N/A	N/A	d.20.1	UBC-like
View	Download	0.237	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.224	N/A	N/A	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like

Predicted Domain #2

Region A:
Residues: [148-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPLAPPDAKG IRVILDSKKA GQLSPGDPVL FRGYRVGSVE TSTFDTQKRN ISYQLFINAP  60
   61 YDRLVTNNVR FWKDSGIAVD LTSAGMRVEM GSLTTLLSGG VSFDVPEGLD LGQPVAPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.383	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.329	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.328	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.310	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.295	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.281	d.52.6	BolA-like
View	Download	0.277	b.44.2	Description not found.
View	Download	0.220	b.1.1	Immunoglobulin
View	Download	0.218	b.1.18	E set domains

Predicted Domain #3

Region A:
Residues: [266-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAFVLYDDQK SIQDSLYTDH IDYLMFFKDS VRGLQPGAPV EFRGIRLGTV SKVPFFAPNM  60
   61 RQTFNDDYRI PVLIRIEPER LKMQLGENAD VVEHLGELLK RGLRGSLKTG NLVTGALYVD 120
  121 LDFYPNTPAI TGIREFNGYQ IIPTVSGGLA QIQQRLMEAL DKINKLPLNP MIEQATSTLS 180
  181 ESQRTMKNLQ TTLDSMNKIL ASQSMQQLPT DMQSTLRELN RSMQGFQPGS AAYNKMVADM 240
  241 QRLDQVLREL QPVLKTLNEK SNALVFEAKD KKDPEPKRAK Q

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits