YRC Public Data Repository - Protein Structure Prediction

Protein:	PPNK_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPNK_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|95109852 - gi\|95109852\|emb\|CAK14557.1\| putative inorganic polyphosphate/ATP-NAD kinase NadK [Pseudomonas entomo... NADK_PSEE4 - NAD kinase OS=Pseudomonas entomophila (strain L48) GN=nadK PE=3 SV=1	3.0E-98	[1..295]	[1..295]
gi\|26988737, gi\|... - gi\|26988737\|ref\|NP_744162.1\| inorganic polyphosphate/ATP-NAD kinase [Pseudomonas putida KT2440], gi\|...	5.0E-98	[1..295]	[20..314]
tr\|I7BCV1\|I7BCV1... - Probable inorganic polyphosphate/ATP-NAD kinase OS=Pseudomonas putida (strain DOT-T1E) GN=ppnK PE=3 ... NADK_PSEPK - NAD kinase OS=Pseudomonas putida (strain KT2440) GN=nadK PE=3 SV=2 tr\|E4RBE4\|E4RBE4... - Probable inorganic polyphosphate/ATP-NAD kinase OS=Pseudomonas putida (strain BIRD-1) GN=ppnK PE=3 S... NADK_PSEP1 - NAD kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=nadK PE=3 SV=1	7.0E-98	[1..295]	[1..295]
PPNK_VIBPA - Probable inorganic polyphosphate/ATP-NAD kinase OS=Vibrio parahaemolyticus GN=ppnK PE=3 SV=1 NADK_VIBPA - NAD kinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=nadK PE=3 SV=1 gi\|149748894, gi... - gi\|153837699\|ref\|ZP_01990366.1\| probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kin...	3.0E-97	[1..291]	[1..293]
gi\|194540249, gi... - gi\|75857316\|ref\|ZP_00764932.1\| COG0061: Predicted sugar kinase [Vibrio sp. Ex25], gi\|254228625\|ref\|Z...	6.0E-97	[1..291]	[1..293]
gi\|91190041, gi\|... - gi\|91225098\|ref\|ZP_01260320.1\| inorganic polyphosphate/ATP-NAD kinase [Vibrio alginolyticus 12G01], ...	7.0E-97	[1..291]	[1..293]
gi\|77963361, gi\|... - gi\|77963361\|ref\|ZP_00827171.1\| COG0061: Predicted sugar kinase [Yersinia mollaretii ATCC 43969], gi\|...	1.0E-96	[2..291]	[4..292]
gi\|238714882, gi... - gi\|77958603\|ref\|ZP_00822634.1\| COG0061: Predicted sugar kinase [Yersinia bercovieri ATCC 43970], gi\|...	1.0E-96	[2..291]	[4..292]
PPNK_ERWCT - Probable inorganic polyphosphate/ATP-NAD kinase OS=Erwinia carotovora subsp. atroseptica GN=ppnK PE=... NADK_PECAS - NAD kinase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=nadK PE=3 SV=1	2.0E-96	[2..291]	[3..291]
gi\|238726851, gi... - gi\|77978424\|ref\|ZP_00833853.1\| COG0061: Predicted sugar kinase [Yersinia intermedia ATCC 29909], gi\|...	3.0E-96	[2..291]	[4..292]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPFRNIGII GRLGSTQVLD TIRRLKKFLI DRHLHVILED TIAEVLPGHG LQTCSRKIMG  60
   61 EICDLVVVVG GDGSMLGAAR ALARHKVPVL GINRGSLGFL TDIRPDELEA KVGEVLDGQY 120
  121 IVESRFLLDA QVRRGIDSMG QGDALNDVVL HPGKSTRMIE FELYIDGQFV CSQKADGLIV 180
  181 ATPTGSTAYA LSAGGPIMHP KLDAIVIVPM YPHMLSSRPI VVDGNSELKI VVSPNMQIYP 240
  241 QVSCDGQNHF TCAPGDTVTI SKKPQKLRLI HPIDHNYYEI CRTKLGWGSR LGGGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.522879
Match:	2an1A
Description:	Structural Genomics, The crystal structure of a putative kinase from Salmonella typhimurim LT2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits