YRC Public Data Repository - Protein Structure Prediction

Protein:	PNTA_ECOLI
Organism:	Escherichia coli
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNTA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75190643 - gi\|75190643\|ref\|ZP_00703910.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli E2...	578.0	[0..1]	[510..6]
gi\|26247850, gi\|... - gi\|26247850\|ref\|NP_753890.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli CFT073], gi\|261...	578.0	[0..1]	[510..19]
gi\|187730548, gi... - gi\|187730548\|ref\|YP_001880357.1\| NAD(P) transhydrogenase, alpha subunit [Shigella boydii CDC 3083-94... gi\|82544030, gi\|... - gi\|82544030\|ref\|YP_407977.1\| NAD(P) transhydrogenase subunit alpha [Shigella boydii Sb227], gi\|81245...	578.0	[0..1]	[510..1]
gi\|237705543, gi... - gi\|237705543\|ref\|ZP_04536024.1\| NAD(P) transhydrogenase subunit alpha [Escherichia sp. 3_2_53FAA], g... gi\|91210814, gi\|... - gi\|91210814\|ref\|YP_540800.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli UTI89], gi\|9107... gi\|115512913, gi... - gi\|117623789\|ref\|YP_852702.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli APEC O1], gi\|1...	577.0	[0..1]	[510..19]
gi\|75512964 - gi\|75512964\|ref\|ZP_00735445.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli 53... gi\|75195683 - gi\|75195683\|ref\|ZP_00705753.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli HS...	577.0	[0..1]	[510..6]
gi\|75178502 - gi\|75178502\|ref\|ZP_00698548.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Shigella boydii BS5...	577.0	[0..1]	[510..6]
gi\|110641725, gi... - gi\|110641725\|ref\|YP_669455.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli 536], gi\|11034... gi\|170519925, gi... - gi\|170682207\|ref\|YP_001743651.1\| NAD(P) transhydrogenase, alpha subunit [Escherichia coli SMS-3-5], ... gi\|190905410, gi... - gi\|191174331\|ref\|ZP_03035838.1\| NAD(P) transhydrogenase, alpha subunit [Escherichia coli F11], gi\|19... gi\|215486779, gi... - gi\|215486779\|ref\|YP_002329210.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli O127:H6 str... gi\|218558473, gi... - gi\|218558473\|ref\|YP_002391386.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli S88], gi\|21... gi\|218689549, gi... - gi\|218689549\|ref\|YP_002397761.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli ED1a], gi\|2...	577.0	[0..1]	[510..1]
gi\|82776828, gi\|... - gi\|82776828\|ref\|YP_403177.1\| NAD(P) transhydrogenase subunit alpha [Shigella dysenteriae Sd197], gi\|...	577.0	[0..1]	[510..1]
gi\|74312072, gi\|... - gi\|74312072\|ref\|YP_310491.1\| NAD(P) transhydrogenase subunit alpha [Shigella sonnei Ss046], gi\|73855... gi\|218351897, gi... - gi\|218695165\|ref\|YP_002402832.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli 55989], gi\|... gi\|218554170, gi... - gi\|218554170\|ref\|YP_002387083.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli IAI1], gi\|2... gi\|209912174, gi... - gi\|209918915\|ref\|YP_002292999.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli SE11], gi\|2...	577.0	[0..1]	[510..1]
gi\|227886039, gi... - gi\|227886039\|ref\|ZP_04003844.1\| NAD(P) transhydrogenase subunit alpha [Escherichia coli 83972], gi\|2... gi\|75236686 - gi\|75236686\|ref\|ZP_00720765.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Escherichia coli F1...	577.0	[0..1]	[510..6]

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Predicted Domain #1

Region A:
Residues: [1-394]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIGIPRERL TNETRVAATP KTVEQLLKLG FTVAVESGAG QLASFDDKAF VQAGAEIVEG  60
   61 NSVWQSEIIL KVNAPLDDEI ALLNPGTTLV SFIWPAQNPE LMQKLAERNV TVMAMDSVPR 120
  121 ISRAQSLDAL SSMANIAGYR AIVEAAHEFG RFFTGQITAA GKVPPAKVMV IGAGVAGLAA 180
  181 IGAANSLGAI VRAFDTRPEV KEQVQSMGAE FLELDFKEEA GSGDGYAKVM SDAFIKAEME 240
  241 LFAAQAKEVD IIVTTALIPG KPAPKLITRE MVDSMKAGSV IVDLAAQNGG NCEYTVPGEI 300
  301 FTTENGVKVI GYTDLPGRLP TQSSQLYGTN LVNLLKLLCK EKDGNITVDF DDVVIRGVTV 360
  361 IRAGEITWPA PPIQVSAQPQ AAQKAAPEVK TEEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1x13A
Description:	Crystal structure of E. coli transhydrogenase domain I
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [395-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTCSPWRKYA LMALAIILFG WMASVAPKEF LGHFTVFALA CVVGYYVVWN VSHALHTPLM  60
   61 SVTNAISGII VVGALLQIGQ GGWVSFLSFI AVLIASINIF GGFTVTQRML KMFRKN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits