YRC Public Data Repository - Protein Structure Prediction

Protein:	CE41012
Organism:	Caenorhabditis elegans
Length:	563 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE41012.

Description	E-value	Query Range	Subject Range
gi\|73987473 - gi\|73987473\|ref\|XP_542180.2\| PREDICTED: similar to nicalin [Canis familiaris]	388.0	[0..1]	[551..330]
gi\|114674611 - gi\|114674611\|ref\|XP_524050.2\| PREDICTED: nicalin [Pan troglodytes]	385.0	[0..1]	[551..138]
gi\|94534903, gi\|... - gi\|94534903\|gb\|AAI16088.1\| Nicalin homolog (zebrafish) [Bos taurus], gi\|115494944\|ref\|NP_001069423.1...	385.0	[0..1]	[551..1]
gi\|60550953, gi\|... - gi\|71895877\|ref\|NP_001025659.1\| nicalin [Xenopus (Silurana) tropicalis], gi\|60550953\|gb\|AAH91598.1\| ...	384.0	[0..1]	[551..1]
NCLN - nicalin homolog (zebrafish)	382.0	[0..1]	[551..1]
gi\|148238026, gi... - gi\|49114782\|gb\|AAH72741.1\| MGC79091 protein [Xenopus laevis], gi\|148238026\|ref\|NP_001085433.1\| MGC79...	379.0	[0..1]	[547..1]
NCLN_MOUSE - Nicalin OS=Mus musculus GN=Ncln PE=1 SV=2	373.0	[0..1]	[547..1]
NCLN_RAT - Nicalin OS=Rattus norvegicus GN=Ncln PE=2 SV=1	372.0	[0..1]	[547..1]

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Predicted Domain #1

Region A:
Residues: [1-563]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDEIIDFFR SPALLFYMTL MLTICVVNGS QQVGEVVETE FHAYRLHQYE ISGNIYGCKN  60
   61 YRVSYEAVSL GARTLRRTMV TTWRDLLTTD VDDMWALSTG AVLIFIPDNL DELNDIDRKA 120
  121 FIDLEAKLLS AKTDLAVYVA PFNDDAVSIL HDVNTRSEKA PTALQHLLQS LSGNTISITS 180
  181 SDQSPELPPS YKPLNIVGRL SSGDRAAPTI AFVAHYDTQS AVPGVSPGAD SNGSGIVALL 240
  241 ELLAVLSKFY DSPSTRPPYN ILFIWTAAGK LNYQGTRHWI DEYQKGFDSA DYAKSGLSRK 300
  301 GFSDDRVDLA ICIEAIGRKT GGFFMHAGKT PSENSVAAQL LRRLKYFSSI SPKKNIELVT 360
  361 KKISLTTVSA WEHEKFNIKR MPAITLSTLP SPSDPARNSI LDLPSALDED ELIDNIRLIG 420
  421 EAVLGYILDL PESGPSSDSR VKSEATMLSK DAVDKQRVHH FIRQFASRPR PVGDQRATES 480
  481 ITSNLASVAA GYGNVFKSAV TITDAKAFGV TQNRLVAERV KPAVFELVIA AGVFTYLSAF 540
  541 YYIATHSQNT IEGTVAAIRK SIF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.0
Match:	2ootA
Description:	No description for 2ootA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits