YRC Public Data Repository - Protein Structure Prediction

Protein:	CE40938
Organism:	Caenorhabditis elegans
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40938.

Description	E-value	Query Range	Subject Range
CE15783 - status:Partially_confirmed UniProt:O17784 protein_id:CAB07352.1	424.0	[0..1]	[366..1]
gi\|187035612, gi... - gi\|39590110\|emb\|CAE61108.1\| Hypothetical protein CBG04865 [Caenorhabditis briggsae], gi\|187035612\|em... gi\|157765554 - gi\|157765554\|ref\|XP_001675120.1\| Hypothetical protein CBG04865 [Caenorhabditis briggsae AF16]	371.0	[0..5]	[365..2]
FUT1_LAGLA - Galactoside 2-alpha-L-fucosyltransferase 1 OS=Lagothrix lagotricha GN=FUT1 PE=3 SV=1	338.0	[0..21]	[364..1]
gi\|28566422 - gi\|28566422\|gb\|AAO43090.1\| alpha(1,2)fucosyltransferase [Chiropotes satanas]	337.0	[0..21]	[364..1]
FUT1_ATEBE - Galactoside 2-alpha-L-fucosyltransferase 1 OS=Ateles belzebuth GN=FUT1 PE=3 SV=1	336.0	[0..21]	[364..1]
gi\|28566426 - gi\|28566426\|gb\|AAO43092.1\| alpha(1,2)fucosyltransferase [Cacajao melanocephalus]	336.0	[0..21]	[364..1]
gi\|28566424 - gi\|28566424\|gb\|AAO43091.1\| alpha(1,2)fucosyltransferase [Pithecia irrorata]	336.0	[0..21]	[364..1]
FUT1_SAPAP - Galactoside 2-alpha-L-fucosyltransferase 1 OS=Sapajus apella GN=FUT1 PE=3 SV=1	335.0	[0..21]	[364..1]
gi\|6491894 - gi\|6491894\|gb\|AAF14063.1\|AF045546_1 alpha(1,2)fucosyltransferase [Eulemur fulvus]	335.0	[0..25]	[364..5]
FUT1_ALOCA - Galactoside 2-alpha-L-fucosyltransferase 1 OS=Alouatta caraya GN=FUT1 PE=3 SV=1	335.0	[0..21]	[364..1]

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Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRMLEIFR LTIKNENGLF FATYSKKAVK SPLFWMILVY SIFTVFLIRA MHEEDPMEVP  60
   61 YPPAQINFRT SRKYISSNYA SSSRLGNHLF ELASVLSISR ELQRVPTFFI ENCYHEKMWE 120
  121 DSNTLIPGLM NHFLIINGSV PSSVKRVKFH QKCCTFDDPS LLDNYEDEYL HLTGTHYQSW 180
  181 KYFSHMRNEL IGYLKTTENT YMDLPKSGEN TFITCVHVRR GDFLRVGFHV ADENFIRSSL 240
  241 NLISRQVAKR ANTATVFFGD DYEFMDSLRN RTSKINAFVS QNSPADDLLY AKSNCDVVLI 300
  301 TAAHSTFGWW MGYFSKGNRV YYTDIQFTKD WILETGEFIS EDYYLPHWTP LKYAGSDNFT 360
  361 VIQSFK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.42
Match:	2hhcA
Description:	No description for 2hhcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits