YRC Public Data Repository - Protein Structure Prediction

Protein:	prs-2
Organism:	Caenorhabditis elegans
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prs-2.

Description	E-value	Query Range	Subject Range
gi\|85859447, gi\|... - gi\|85859447\|ref\|YP_461649.1\| prolyl-tRNA synthetase [Syntrophus aciditrophicus SB], gi\|85722538\|gb\|A...	188.0	[0..3]	[138..20]
gi\|90417103, gi\|... - gi\|90417103\|ref\|ZP_01225031.1\| prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2207], gi\|90... gi\|90417103\|ref\|... - prolyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]	188.0	[0..3]	[138..1]
SYP_SACD2 - Proline--tRNA ligase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=proS PE=3...	187.0	[0..3]	[138..1]
SYP_ALTMD - Proline--tRNA ligase OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep e... SYP_ALTMD - Proline--tRNA ligase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=proS PE=3 SV=1	187.0	[0..3]	[138..1]
gi\|88937615, gi\|... - gi\|88937615\|ref\|ZP_01143171.1\| Prolyl-tRNA synthetase, bacterial [Geobacter uraniumreducens Rf4], gi...	186.0	[0..2]	[138..14]
gi\|88700112, gi\|... - gi\|88705599\|ref\|ZP_01103309.1\| prolyl-tRNA synthetase [gamma proteobacterium KT 71], gi\|88700112\|gb\|...	185.0	[0..3]	[138..1]
SYP_SHEDO - Proline--tRNA ligase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=proS ...	185.0	[0..3]	[138..1]
SYP_PSEHT - Proline--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=proS PE=3 SV=2	185.0	[0..3]	[138..1]
gi\|89082015, gi\|... - gi\|89093619\|ref\|ZP_01166566.1\| prolyl-tRNA synthetase [Oceanospirillum sp. MED92], gi\|89082015\|gb\|EA...	184.0	[0..3]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFKARKWIL SGASAQKSKS MAHTMLVENG FILPTAKGFY SLLPLGQRVI DKLCRILDVE  60
   61 FQNSGALKIA MPIVGTQQLW EKTGRWEAMG PEMIRFHDRQ QNHMCLQVAN RRGNVHRTDR 120
  121 NTITAQKITI SPYCLSNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2i4lA
Description:	No description for 2i4lA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits