YRC Public Data Repository - Protein Structure Prediction

Protein:	CE40946
Organism:	Caenorhabditis elegans
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40946.

Description	E-value	Query Range	Subject Range
CE05727 - Yeast protein 00926 like status:Confirmed UniProt:Q19789 protein_id:CAA93284.1	298.0	[0..1]	[296..1]
TM10A_BOVIN - tRNA methyltransferase 10 homolog A OS=Bos taurus GN=TRMT10A PE=2 SV=1	293.0	[0..1]	[294..1]
RG9MTD2 - RNA (guanine-9-) methyltransferase domain containing 2	292.0	[0..1]	[296..1]
gi\|114595335, gi... - gi\|114595339\|ref\|XP_001167367.1\| PREDICTED: RNA (guanine-9-) methyltransferase domain containing 2 i...	291.0	[0..1]	[296..1]
TM10A_RAT - tRNA methyltransferase 10 homolog A OS=Rattus norvegicus GN=Trmt10a PE=1 SV=1	290.0	[0..9]	[294..24]
gi\|74002269 - gi\|74002269\|ref\|XP_544994.2\| PREDICTED: similar to RNA (guanine-9-) methyltransferase domain contain...	290.0	[0..1]	[296..1]
gi\|115384826, gi... - gi\|115384826\|ref\|XP_001208960.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	282.0	[0..2]	[276..59]
gi\|109075100, gi... - gi\|109075100\|ref\|XP_001107528.1\| PREDICTED: similar to RNA (guanine-9-) methyltransferase domain con...	281.0	[0..1]	[282..1]
gi\|68363016 - gi\|68363016\|ref\|XP_688707.1\| PREDICTED: similar to RNA (guanine-9-) methyltransferase domain contain...	279.0	[0..3]	[268..21]
gi\|50746801 - gi\|50746801\|ref\|XP_420661.1\| PREDICTED: similar to RNA (guanine-9-) methyltransferase domain contain...	278.0	[0..8]	[286..28]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEETIEKFE DNVEHQNQDQ LPEGMSKKQL RRQKYKVKWE EKKLVKRAAE RIRKKEKRAA  60
   61 LKESGDLSKL RKRKDFRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [79-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQSNSKQRI ALDMSFDDLM IEKDQKRTVQ QIGWCYTANR HSPDPFQFHV VGFDGPSRKI  60
   61 YDGNEHNLNQ DIHLHQEKLE NLFKPEEIVY LTSESENVLS DLDDTKVYVI GGIVDHNSQK 120
  121 GLCYRIAQEK GFGHAKLPLD EHLLMKSRRV LTINQVYEIL VHYSVHKNWK DALLSIIPER 180
  181 KNAQLKEEVV EEKPESLEEI GKLDTESTDT ATGSPKIN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.113509
Match:	PF01746.12
Description:	No description for PF01746.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits