YRC Public Data Repository - Protein Structure Prediction

Protein:	CE40971
Organism:	Caenorhabditis elegans
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40971.

Description	E-value	Query Range	Subject Range
gi\|45387849, gi\|... - gi\|45501115\|gb\|AAH67161.1\| Solute carrier family 31 (copper transporters), member 1 [Danio rerio], g...	138.0	[0..2]	[142..22]
gi\|28201980, gi\|... - gi\|28201980\|ref\|NP_780299.1\| solute carrier family 31, member 1 [Mus musculus], gi\|26338440\|dbj\|BAC3...	133.0	[0..2]	[142..30]
gi\|110771600 - gi\|110771600\|ref\|XP_001121648.1\| PREDICTED: similar to Copper transporter 1A CG3977-PA [Apis mellife...	132.0	[0..1]	[139..50]
gi\|57094253 - gi\|57094253\|ref\|XP_538800.1\| PREDICTED: similar to High-affinity copper uptake protein 1 (hCTR1) (Co...	131.0	[0..2]	[142..78]
Ctr1B-PA - The gene Copper transporter 1B is referred to in FlyBase by the symbol Dmel\Ctr1B (CG7459, FBgn00624... gi\|220957234, gi... - gi\|220957234\|gb\|ACL91160.1\| Ctr1B-PA [synthetic construct], gi\|220947864\|gb\|ACL86475.1\| Ctr1B-PA [sy...	131.0	[0..1]	[138..1]
gi\|47575788, gi\|... - gi\|89273850\|emb\|CAJ83621.1\| solute carrier family 31 (copper transporters), member 1 [Xenopus tropic...	130.0	[0..2]	[142..17]
gi\|108870276, gi... - gi\|157135199\|ref\|XP_001663426.1\| high affinity copper transporter, putative [Aedes aegypti], gi\|1088...	129.0	[0..6]	[136..1]
gi\|118793568, gi... - gi\|118793568\|ref\|XP_320931.3\| ENSANGP00000017579 [Anopheles gambiae str. PEST], gi\|116115872\|gb\|EAA0...	127.0	[0..2]	[142..40]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMMNMSMTT MSGPVAKRHR MWMWYHVDVE DTVLFKSWTV FDAGTMVWTC FVVAAAGILL  60
   61 EALKYARWAT EERMKIDQEN VDSKTNFWKR HIIDSLYHFW QLLLAYILMN VYMVFSVYIC 120
  121 LSLCFGLAIG HFVFASRTGS SL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.585027
Match:	PF04145.6
Description:	No description for PF04145.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits