YRC Public Data Repository - Protein Structure Prediction

Protein:	PMP3_CANAX
Organism:	Candida albicans
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMP3_CANAX.

Description	E-value	Query Range	Subject Range
gi\|145009364, gi... - gi\|39949765\|ref\|XP_363224.1\| hypothetical protein MGG_08808 [Magnaporthe grisea 70-15], gb\|EAA51286....	94.0	[0..1]	[54..1]
gi\|40745267, gi\|... - gi\|67523713\|ref\|XP_659916.1\| hypothetical protein AN2312.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	93.0	[0..1]	[55..1]
gi\|46121245, gi\|... - gi\|46121245\|ref\|XP_385177.1\| hypothetical protein FG05001.1 [Gibberella zeae PH-1], gi\|42551259\|gb\|E...	92.0	[0..1]	[54..1]
gi\|70997695, gi\|... - gi\|70997695\|ref\|XP_753585.1\| stress response RCI peptide [Aspergillus fumigatus Af293], gi\|66851221\|... gi\|159126684 - gi\|159126684\|gb\|EDP51800.1\| stress response RCI peptide, putative [Aspergillus fumigatus A1163]	92.0	[0..1]	[54..1]
gi\|238506933, gi... - gi\|238506933\|ref\|XP_002384668.1\| stress response RCI peptide, putative [Aspergillus flavus NRRL3357]... gi\|83776210 - gi\|83776210\|dbj\|BAE66329.1\| unnamed protein product [Aspergillus oryzae] gi\|169786003 - gi\|169786003\|ref\|XP_001827462.1\| hypothetical protein [Aspergillus oryzae RIB40]	90.0	[0..1]	[54..1]
gi\|111062769, gi... - gi\|169611226\|ref\|XP_001799031.1\| hypothetical protein SNOG_08721 [Phaeosphaeria nodorum SN15], gi\|11...	88.0	[0..1]	[55..1]
gi\|32411383, gi\|... - gi\|32411383\|ref\|XP_326172.1\| predicted protein [Neurospora crassa], gi\|28924188\|gb\|EAA33343.1\| conse... gi\|85108462 - gi\|85108462\|ref\|XP_962579.1\| hypothetical protein NCU06317 [Neurospora crassa OR74A]	86.0	[0..1]	[55..1]
gi\|119192640, gi... - gi\|90305712\|gb\|EAS35343.1\| hypothetical protein CIMG_00697 [Coccidioides immitis RS], gi\|119192640\|r...	86.0	[0..1]	[54..1]
gi\|114190175, gi... - gi\|115401292\|ref\|XP_001216234.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	85.0	[0..1]	[54..1]
gi\|49647026 - gi\|49647026\|emb\|CAG83413.1\| YALI0B20966p [Yarrowia lipolytica] gi\|50547381, gi\|... - gi\|50547381\|ref\|XP_501160.1\| YALI0B20966p [Yarrowia lipolytica], gi\|49647026\|emb\|CAG83413.1\| unnamed...	83.0	[0..1]	[54..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSEKIIEVI IAIFLPPVAV FMKCGATTPL WINLVLCIFI WFPAILHALY VVLKD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.508638
Match:	PF01679.8
Description:	No description for PF01679.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.803	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.803	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.716	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.677	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.666	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.666	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.633	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.630	N/A	N/A	a.144.2	Ribosomal protein L20
View	Download	0.612	N/A	N/A	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits