YRC Public Data Repository - Protein Structure Prediction

Protein:	PITA_ECOLI
Organism:	Escherichia coli
Length:	499 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PITA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77959582 - gi\|77959582\|ref\|ZP_00823600.1\| COG0306: Phosphate/sulphate permeases [Yersinia bercovieri ATCC 43970...	371.0	[0..1]	[499..1]
gi\|77963016 - gi\|77963016\|ref\|ZP_00826830.1\| COG0306: Phosphate/sulphate permeases [Yersinia mollaretii ATCC 43969...	370.0	[0..1]	[499..1]
gi\|50119010, gi\|... - gi\|50119010\|ref\|YP_048177.1\| low-affinity inorganic phosphate transporter [Pectobacterium atroseptic...	369.0	[0..1]	[499..1]
gi\|187430349, gi... - gi\|75179935\|ref\|ZP_00699922.1\| COG0306: Phosphate/sulphate permeases [Shigella boydii BS512], gi\|187... gi\|82545857, gi\|... - gi\|82545857\|ref\|YP_409804.1\| low affinity phosphate transport [Shigella boydii Sb227], gi\|81247268\|g...	363.0	[0..1]	[499..1]
gi\|77975108 - gi\|77975108\|ref\|ZP_00830645.1\| COG0306: Phosphate/sulphate permeases [Yersinia frederiksenii ATCC 33...	363.0	[0..1]	[499..1]
gi\|108809786, gi... - gi\|108809786\|ref\|YP_653702.1\| phosphate transport protein [Yersinia pestis Antiqua], gi\|108781699\|gb... gi\|45443079, gi\|... - gi\|45443079\|ref\|NP_994618.1\| phosphate ABC transporter permease [Yersinia pestis biovar Microtus str... gi\|145600584, gi... - gi\|145600584\|ref\|YP_001164660.1\| phosphate transport protein [Yersinia pestis Pestoides F], gi\|14521... gi\|108813776, gi... - gi\|108813776\|ref\|YP_649543.1\| phosphate transport protein [Yersinia pestis Nepal516], gi\|108777424\|g... gi\|21960856, gi\|... - gi\|22127733\|ref\|NP_671156.1\| phosphate ABC transporter permease [Yersinia pestis KIM], gi\|21960856\|g...	363.0	[0..1]	[499..34]
gi\|83571562, gi\|... - gi\|83571562\|ref\|ZP_00923002.1\| COG0306: Phosphate/sulphate permeases [Shigella dysenteriae 1012], gi...	362.0	[0..1]	[499..1]
gi\|77978652, gi\|... - gi\|77978652\|ref\|ZP_00834078.1\| COG0306: Phosphate/sulphate permeases [Yersinia intermedia ATCC 29909...	362.0	[0..1]	[499..1]
gi\|30065223, gi\|... - gi\|30065223\|ref\|NP_839394.1\| low-affinity phosphate transport protein [Shigella flexneri 2a str. 245... gi\|110807329, gi... - gi\|110807329\|ref\|YP_690849.1\| inorganic phosphate transporter [Shigella flexneri 5 str. 8401], gi\|11...	362.0	[0..1]	[499..1]
gi\|85058053, gi\|... - gi\|85058053\|ref\|YP_453755.1\| low-affinity inorganic phosphate transport protein [Sodalis glossinidiu...	359.0	[0..1]	[499..1]

Back

Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLFAGLDL HTGLLLLLAL AFVLFYEAIN GFHDTANAVA TVIYTRAMRS QLAVVMAAVF  60
   61 NFLGVLLGGL SVAYAIVHML PTDLLLNMGS SHGLAMVFSM LLAAIIWNLG TWYFGLPASS 120
  121 SHTLIGAIIG IGLTNALMTG TSVVDALNIP KVLSIFGSLI VSPIVGLVFA GGLIFLLRRY 180
  181 WSGTKKRARI HLTPAEREKK DGKKKPPFWT RIALILSAIG VAFSH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [226-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GANDGQKGIG LVMLVLIGVA PAGFVVNMNA TGYEITRTRD AINNVEAYFE QHPALLKQAT  60
   61 GADQLVPAPE AGATQPAEFH CHPSNTINAL NRLKGMLTTD VESY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.557	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.515	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.442	a.60.2	RuvA domain 2-like
View	Download	0.425	a.64.1	Saposin
View	Download	0.408	a.2.7	tRNA-binding arm

Predicted Domain #3

Region A:
Residues: [330-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKLSLDQRSQ MRRIMLCVSD TIDKVVKMPG VSADDQRLLK KLKSDMLSTI EYAPVWIIMA  60
   61 VALALGIGTM IGWRRVATTI GEKIGKKGMT YAQGMSAQMT AAVSIGLASY TGMPVSTTHV 120
  121 LSSSVAGTMV VDGGGLQRKT VTSILMAWVF TLPAAVLLSG GLYWLSLQFL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits