YRC Public Data Repository - Protein Structure Prediction

Protein:	PIOO_ECOLI
Organism:	Escherichia coli
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIOO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74313841, gi\|... - gi\|74313841\|ref\|YP_312260.1\| chromosome replication protein PioO [Shigella sonnei Ss046], gi\|7385731...	267.0	[0..1]	[139..1]
gi\|227839597, gi... - gi\|227883453\|ref\|ZP_04001258.1\| chromosome replication protein PioO [Escherichia coli 83972], gi\|227... gi\|26249917, gi\|... - gi\|26249917\|ref\|NP_755957.1\| chromosome replication protein PioO [Escherichia coli CFT073], gi\|26110...	261.0	[0..1]	[139..1]
gi\|91212759, gi\|... - gi\|91212759\|ref\|YP_542745.1\| chromosome replication protein PioO [Escherichia coli UTI89], gi\|910743... gi\|191171582, gi... - gi\|191171582\|ref\|ZP_03033130.1\| protein pioO [Escherichia coli F11], gi\|190908209\|gb\|EDV67800.1\| pro... gi\|110643561, gi... - gi\|110643561\|ref\|YP_671291.1\| chromosome replication protein PioO [Escherichia coli 536], gi\|1103451... gi\|218560383, gi... - gi\|218560383\|ref\|YP_002393296.1\| chromosome replication protein PioO [Escherichia coli S88], gi\|2183... gi\|226902316, gi... - gi\|237703052\|ref\|ZP_04533533.1\| chromosome replication protein PioO [Escherichia sp. 3_2_53FAA], gi\|...	252.0	[0..1]	[139..1]
gi\|75197256 - gi\|75197256\|ref\|ZP_00707326.1\| hypothetical protein EcolH_01003072 [Escherichia coli HS] gi\|83584675 - gi\|83584675\|ref\|ZP_00923341.1\| hypothetical protein Ecol1_01004094 [Escherichia coli 101-1]	174.0	[0..44]	[139..1]
gi\|75241584 - gi\|75241584\|ref\|ZP_00725429.1\| hypothetical protein EcolF_01001590 [Escherichia coli F11]	158.0	[0..44]	[139..1]
gi\|75511228 - gi\|75511228\|ref\|ZP_00733930.1\| hypothetical protein Ecol5_01004440 [Escherichia coli 53638]	145.0	[0..44]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEFYIAARE QKETGHPGIF SRQKHSTIIY VICLLLICLW FAGMVLVGGY ARQLWVLWIV  60
   61 KAEVTVEAET PAFKQSTQHY FFKKQPLPVV ESVEEEDDPG VAVENAPSSS EDEENTVEES 120
  121 EEKAGLRERV KNALNELER

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.508	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.501	a.29.2	Bromodomain
View	Download	0.460	a.29.2	Bromodomain
View	Download	0.424	a.47.2	t-snare proteins
View	Download	0.417	a.77.1	DEATH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits