YRC Public Data Repository - Protein Structure Prediction

Protein:	PHP14_RABIT
Organism:	Oryctolagus cuniculus
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHP14_RABIT.

Description	E-value	Query Range	Subject Range
PHPT1 - phosphohistidine phosphatase 1	201.0	[0..1]	[125..1]
PHP14_BOVIN - 14 kDa phosphohistidine phosphatase OS=Bos taurus GN=PHPT1 PE=2 SV=1	199.0	[0..1]	[125..1]
gi\|57092175 - gi\|57092175\|ref\|XP_548366.1\| PREDICTED: similar to 14 kDa phosphohistidine phosphatase (Phosphohisti...	198.0	[0..1]	[125..1]
PHP14_PONAB - 14 kDa phosphohistidine phosphatase OS=Pongo abelii GN=PHPT1 PE=2 SV=1 PHP14_PONPY - 14 kDa phosphohistidine phosphatase - Pongo pygmaeus (Orangutan)	196.0	[0..1]	[125..1]
gi\|164663846, gi... - ref\|XP_216013.1\| similar to 14 kDa phosphohistidine phosphatase [Rattus norvegicus], gi\|164663846\|re...	196.0	[0..3]	[125..2]
PHP14_MOUSE - 14 kDa phosphohistidine phosphatase OS=Mus musculus GN=Phpt1 PE=1 SV=1	196.0	[0..3]	[125..2]
JANA_DROPS - Sex-regulated protein janus-A OS=Drosophila pseudoobscura pseudoobscura GN=janA PE=3 SV=2 JANA_DROPS - Sex-regulated protein janus-A - Drosophila pseudoobscura (Fruit fly)	187.0	[0..1]	[125..26]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAGLAQIP DVDIDSDGVF KYVLIRVHAA PPSEAPGGES KDIVRGYKWA EYHADIYDKV  60
   61 SGELQKKGHD CECLGGGRIS HQSQDRKIHV YGYSMGYGRA QHSVSTEKIR AKYPDYEVTW 120
  121 ADDGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	2nmmA
Description:	No description for 2nmmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits