YRC Public Data Repository - Protein Structure Prediction

Protein:	PFD4_AVEFA
Organism:	Avena fatua
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFD4_AVEFA.

Description	E-value	Query Range	Subject Range
gi\|94420296 - gi\|94420296\|ref\|XP_001005759.1\| PREDICTED: similar to prefoldin subunit 4 [Mus musculus]	164.0	[0..3]	[126..43]
gi\|13160148, gi\|... - gi\|1620561\|gb\|AAB17063.1\| C-1, emb\|CAB98782.2\| dJ1162C3.1 (Prefoldin 4 (C-1)) [Homo sapiens]	148.0	[0..1]	[126..1]
gi\|73992603 - gi\|73992603\|ref\|XP_534459.2\| PREDICTED: similar to prefoldin 4 [Canis familiaris]	145.0	[0..4]	[126..7]
gi\|60654257 - gi\|60654257\|gb\|AAX29821.1\| prefoldin 4 [synthetic construct]	142.0	[0..7]	[126..11]
PFD4_BOVIN - Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1	139.0	[0..7]	[126..11]
gi\|50758981 - gi\|50758981\|ref\|XP_417503.1\| PREDICTED: similar to prefoldin subunit 4 [Gallus gallus]	138.0	[0..7]	[126..11]
gi\|90302566, gi\|... - gi\|90302566\|gb\|EAS32197.1\| hypothetical protein CIMG_03221 [Coccidioides immitis RS], gi\|119186347\|r...	137.0	[0..6]	[124..37]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQGDGTEAQ VTWEDQQNIN RFGRLNNRFH ELTDEIRLAK EANENLEDAG NELILCDEDV  60
   61 VRFQIGEVFA HMPMDDVEAR LEQMKEDAAK KLERLEEEKE SILAQMAELK KILYGKFKDA 120
  121 INLEED

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.25
Match:	1fxkB
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits