YRC Public Data Repository - Protein Structure Prediction

Protein:	PCP_YERPE
Organism:	Yersinia pestis
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCP_YERPE.

Description	E-value	Query Range	Subject Range
gi\|77978036 - gi\|77978036\|ref\|ZP_00833471.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p...	2.0E-82	[1..215]	[1..215]
PCP1_PHOLL - Pyrrolidone-carboxylate peptidase 1 OS=Photorhabdus luminescens subsp. laumondii GN=pcp1 PE=3 SV=1 PCP1_PHOLL - Pyrrolidone-carboxylate peptidase 1 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 /...	2.0E-82	[1..215]	[1..220]
gi\|238712781, gi... - gi\|77956259\|ref\|ZP_00820376.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p...	3.0E-82	[1..215]	[1..215]
gi\|165868832, gi... - gi\|165868832\|ref\|ZP_02213492.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0488], g... gi\|167514871, gi... - gi\|167637364\|ref\|ZP_02395644.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0193], g... gi\|170705179, gi... - gi\|170705179\|ref\|ZP_02895644.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0389], g... gi\|172084061, gi... - gi\|177650109\|ref\|ZP_02933110.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. A0174], g... gi\|190564734, gi... - gi\|190564734\|ref\|ZP_03017655.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis Tsiankovskii-I... gi\|49179808, gi\|... - gi\|49185881\|ref\|YP_029133.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Sterne], gi\|... gi\|50196941, gi\|... - gi\|50196941\|ref\|YP_052632.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. 'Ames Ancest... gi\|254760929 - gi\|254760929\|ref\|ZP_05212953.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Australia... gi\|254752412 - gi\|254752412\|ref\|ZP_05204448.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Vollum] gi\|254738096 - gi\|254738096\|ref\|ZP_05195799.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Western N... PCP_BACAA - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis (strain A0248) GN=pcp PE=3 SV=1 gi\|229145672, gi... - gi\|229145672\|ref\|ZP_04274055.1\| Pyrrolidone-carboxylate peptidase [Bacillus cereus BDRD-ST24], gi\|22... gi\|228928140, gi... - gi\|228928140\|ref\|ZP_04091184.1\| Pyrrolidone-carboxylate peptidase [Bacillus thuringiensis serovar po... gi\|30257673, gi\|... - gi\|30263040\|ref\|NP_845417.1\| pyrrolidone-carboxylate peptidase [Bacillus anthracis str. Ames], gi\|30... gi\|228915662, gi... - gi\|228915662\|ref\|ZP_04079249.1\| Pyrrolidone-carboxylate peptidase [Bacillus thuringiensis serovar pu... gi\|65320351, gi\|... - gi\|65320351\|ref\|ZP_00393310.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p... PCP_BACAC - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pcp PE=3 SV=... gi\|206974548, gi... - gi\|206974548\|ref\|ZP_03235464.1\| pyrrolidone-carboxylate peptidase [Bacillus cereus H3081.97], gi\|206... PCP_BACC7 - Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain AH187) GN=pcp PE=3 SV=1 PCP_BACAN - Pyrrolidone-carboxylate peptidase OS=Bacillus anthracis GN=pcp PE=1 SV=1	3.0E-82	[1..215]	[1..215]
gi\|238797747, gi... - gi\|77961520\|ref\|ZP_00825355.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p...	8.0E-82	[1..215]	[1..215]
PCP_YERP3 - Pyrrolidone-carboxylate peptidase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=...	1.0E-81	[1..215]	[1..215]
PCP_BACC1 - Pyrrolidone-carboxylate peptidase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=pcp PE=3 SV=1	1.0E-81	[1..215]	[1..215]
PCP_BACHK - Pyrrolidone-carboxylate peptidase OS=Bacillus thuringiensis subsp. konkukian GN=pcp PE=3 SV=1 PCP_BACHK - Pyrrolidone-carboxylate peptidase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pcp P...	2.0E-81	[1..215]	[1..215]
gi\|77972470, gi\|... - gi\|77972470\|ref\|ZP_00828035.1\| COG2039: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl p...	2.0E-81	[1..215]	[2..216]
PCP1_RALSO - Pyrrolidone-carboxylate peptidase 1 OS=Ralstonia solanacearum GN=pcp1 PE=3 SV=1 PCP1_RALSO - Pyrrolidone-carboxylate peptidase 1 OS=Ralstonia solanacearum (strain GMI1000) GN=pcp1 PE=3 SV=1	4.0E-81	[1..215]	[1..215]

Back

Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVLITGFE PFGGERINPS WEVVKQMNDL MMGGVRIVAR QLPCAFGEAL TALNTAIDDV  60
   61 QPVLVLAIGQ AGGRADITIE RVAINVDDAR IPDNLGNQPV DQPIIQEGPA AYFTRLPIKA 120
  121 MVQGIREAGI PASVSQTAGT YVCNHVMYGL LHRLNQFNNE VKGGFIHIPY LPEQAVDHPG 180
  181 APSMSAQSVL VALELAISIA LQIEHDLHIT GGAVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.0
Match:	1augA
Description:	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits