YRC Public Data Repository - Protein Structure Prediction

Protein:	PBP2_ECOLI
Organism:	Escherichia coli
Length:	633 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBP2_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75175899, gi\|... - gi\|75175899\|ref\|ZP_00696086.1\| COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Shi...	589.0	[0..1]	[633..1]
gi\|157155963, gi... - gi\|75189673\|ref\|ZP_00702940.1\| COG0768: Cell division protein FtsI/penicillin-binding protein 2 [Esc...	588.0	[0..1]	[633..1]
gi\|82775904, gi\|... - gi\|82775904\|ref\|YP_402251.1\| penicillin-binding protein 2 [Shigella dysenteriae Sd197], gi\|81240052\|...	587.0	[0..1]	[633..1]
gi\|68188778, gi\|... - gi\|91776844\|ref\|YP_546600.1\| peptidoglycan glycosyltransferase [Methylobacillus flagellatus KT], gi\|...	587.0	[0..1]	[631..1]
gi\|82543081, gi\|... - gi\|82543081\|ref\|YP_407028.1\| penicillin-binding protein 2 [Shigella boydii Sb227], gi\|81244492\|gb\|AB...	586.0	[0..1]	[633..1]
gi\|110804716, gi... - gi\|110804716\|ref\|YP_688236.1\| penicillin-binding protein 2 [Shigella flexneri 5 str. 8401], gi\|11061...	586.0	[0..1]	[633..1]
gi\|74311171, gi\|... - gi\|74311171\|ref\|YP_309590.1\| penicillin-binding protein 2 [Shigella sonnei Ss046], gi\|73854648\|gb\|AA...	585.0	[0..1]	[633..1]
gi\|24986566, gi\|... - gi\|26991487\|ref\|NP_746912.1\| penicillin-binding protein 2 [Pseudomonas putida KT2440], gi\|24986566\|g...	585.0	[0..1]	[631..1]
gi\|30062176, gi\|... - gi\|30062176\|ref\|NP_836347.1\| penicillin-binding protein 2 [Shigella flexneri 2a str. 2457T], gi\|3004... gi\|24050891, gi\|... - gi\|24112065\|ref\|NP_706575.1\| penicillin-binding protein 2 [Shigella flexneri 2a str. 301], gi\|240508...	584.0	[0..1]	[633..1]
gi\|197265163, gi... - gi\|197265163\|ref\|ZP_03165237.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica se... gi\|197094625, gi... - gi\|197363148\|ref\|YP_002142785.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|194710110, gi... - gi\|194734608\|ref\|YP_002113758.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|197211922, gi... - gi\|197248219\|ref\|YP_002145615.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|194410201, gi... - gi\|194451897\|ref\|YP_002044674.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|194469589, gi... - gi\|194469589\|ref\|ZP_03075573.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica se... gi\|168823257, gi... - gi\|205340475\|gb\|EDZ27239.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serova... gi\|194445890, gi... - gi\|194445890\|ref\|YP_002039882.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|205340069, gi... - gi\|205340069\|gb\|EDZ26833.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serova... gi\|195631885, gi... - gi\|195631885\|gb\|EDX50405.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serova... gi\|168231653, gi... - gi\|205333990\|gb\|EDZ20754.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serova... gi\|168236632, gi... - gi\|197290300\|gb\|EDY29656.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serova... gi\|167550824, gi... - gi\|205324262\|gb\|EDZ12101.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serova... gi\|167990647, gi... - gi\|205331012\|gb\|EDZ17776.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serova... gi\|161364508, gi... - gi\|161615144\|ref\|YP_001589109.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|56128482, gi\|... - gi\|56414225\|ref\|YP_151300.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serov... gi\|62126873, gi\|... - gi\|62179240\|ref\|YP_215657.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica serov... gi\|207856106, gi... - gi\|207856106\|ref\|YP_002242757.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|224467003, gi... - gi\|224582476\|ref\|YP_002636274.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|204930546, gi... - gi\|204930546\|ref\|ZP_03221476.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica se... gi\|205271709, gi... - gi\|205351928\|ref\|YP_002225729.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|16419152, gi\|... - gi\|16764017\|ref\|NP_459632.1\| penicillin-binding protein 2 [Salmonella typhimurium LT2], gi\|16419152\|... gi\|198243526, gi... - gi\|198243526\|ref\|YP_002214629.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica s... gi\|199601961, gi... - gi\|200389516\|ref\|ZP_03216127.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica se... gi\|238911590 - gi\|238911590\|ref\|ZP_04655427.1\| penicillin-binding protein 2 [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=mrdA] [protein=penicillin-binding protein 2] [protein_id=YP_005236356.1] [location=complement(...	583.0	[0..1]	[632..1]

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Predicted Domain #1

Region A:
Residues: [1-633]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLQNSFRDY TAESALFVRR ALVAFLGILL LTGVLIANLY NLQIVRFTDY QTRSNENRIK  60
   61 LVPIAPSRGI IYDRNGIPLA LNRTIYQIEM MPEKVDNVQQ TLDALRSVVD LTDDDIAAFR 120
  121 KERARSHRFT SIPVKTNLTE VQVARFAVNQ YRFPGVEVKG YKRRYYPYGS ALTHVIGYVS 180
  181 KINDKDVERL NNDGKLANYA ATHDIGKLGI ERYYEDVLHG QTGYEEVEVN NRGRVIRQLK 240
  241 EVPPQAGHDI YLTLDLKLQQ YIETLLAGSR AAVVVTDPRT GGVLALVSTP SYDPNLFVDG 300
  301 ISSKDYSALL NDPNTPLVNR ATQGVYPPAS TVKPYVAVSA LSAGVITRNT TLFDPGWWQL 360
  361 PGSEKRYRDW KKWGHGRLNV TRSLEESADT FFYQVAYDMG IDRLSEWMGK FGYGHYTGID 420
  421 LAEERSGNMP TREWKQKRFK KPWYQGDTIP VGIGQGYWTA TPIQMSKALM ILINDGIVKV 480
  481 PHLLMSTAED GKQVPWVQPH EPPVGDIHSG YWELAKDGMY GVANRPNGTA HKYFASAPYK 540
  541 IAAKSGTAQV FGLKANETYN AHKIAERLRD HKLMTAFAPY NNPQVAVAMI LENGGAGPAV 600
  601 GTLMRQILDH IMLGDNNTDL PAENPAVAAA EDH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.30103
Match:	1mwrA
Description:	Penicillin binding protein 2a (PBP2A), N-terminal domain; Penicillin binding protein 2a (PBP2A), middle domain; Penicillin binding protein 2a (PBP2A), C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits