YRC Public Data Repository - Protein Structure Prediction

Protein:	PARA_CAUCR
Organism:	Caulobacter vibrioides
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PARA_CAUCR.

Description	E-value	Query Range	Subject Range
gi\|113936703, gi... - gi\|167648981\|ref\|YP_001686644.1\| cobyrinic acid ac-diamide synthase [Caulobacter sp. K31], gi\|167351...	238.0	[0..2]	[267..5]
gi\|1916914 - gi\|1916914\|gb\|AAB51267.1\| ParA [Caulobacter crescentus] gi\|1916914 - gi\|1916914\|gb\|AAB51267.1\| ParA [Caulobacter crescentus]	235.0	[0..1]	[267..1]
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	228.0	[0..7]	[261..3]
gi\|106893737, gi... - gi\|158321886\|ref\|YP_001514393.1\| cobyrinic acid ac-diamide synthase [Alkaliphilus oremlandii OhILAs]...	226.0	[0..6]	[261..2]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	225.0	[0..7]	[260..3]
gi\|56422025, gi\|... - gi\|56422025\|ref\|YP_149343.1\| sporulation initiation inhibitor protein [Geobacillus kaustophilus HTA4... gi\|229497925, gi... - gi\|229497925\|ref\|ZP_04391624.1\| Cobyrinic acid ac-diamide synthase [Geobacillus sp. Y412MC52], gi\|22... gi\|221086934, gi... - gi\|221086934\|ref\|ZP_03556474.1\| Cobyrinic acid ac-diamide synthase [Geobacillus sp. Y412MC61], gi\|22...	222.0	[0..6]	[258..2]
gi\|13473773, gi\|... - gi\|14024524\|dbj\|BAB51127.1\| chromosome partitioning protein; ParA [Mesorhizobium loti MAFF303099], g...	222.0	[0..1]	[264..1]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	221.0	[0..7]	[260..3]
gi\|51858156, gi\|... - gi\|51894467\|ref\|YP_077158.1\| ParA family ATPase [Symbiobacterium thermophilum IAM 14863], gi\|5185815...	221.0	[0..7]	[263..3]
gi\|227518145, gi... - gi\|227518145\|ref\|ZP_03948194.1\| chromosome partitioning ATPase [Enterococcus faecalis TX0104], gi\|22... gi\|29345208, gi\|... - gi\|29377740\|ref\|NP_816894.1\| ParaA family ATPase [Enterococcus faecalis V583], gi\|29345208\|gb\|AAO829... gi\|238830948, gi... - gi\|238856387\|ref\|ZP_04646656.1\| sporulation initiation inhibitor protein soj [Enterococcus faecalis ... gi\|229304168, gi... - gi\|229550735\|ref\|ZP_04439460.1\| chromosome partitioning ATPase [Enterococcus faecalis ATCC 29200], g... gi\|229307747, gi... - gi\|229547165\|ref\|ZP_04435890.1\| chromosome partitioning ATPase [Enterococcus faecalis TX1332], gi\|22... gi\|227175226, gi... - gi\|227555649\|ref\|ZP_03985696.1\| chromosome partitioning ATPase [Enterococcus faecalis HH22], gi\|2271...	220.0	[0..7]	[259..3]

Back

Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANPLRVLA IANQKGGVGK TTTAINLGTA LAACGERVLL IDADPQGNCS TGLGIGRTQR  60
   61 RTTLYDVLMG EAPVVDAAVK TELPGLDVIP ADADLSGVEI ELGQTARRSY RLRDALEAIR 120
  121 ANGPYTYVLI DCPPSLNVLT VNAMTAADAV FVPLQCEFFA LEGLTQLMRT IERVRGSLNP 180
  181 RLEIQGVVLT MYDRRNSLSE QVAKDVRAHF GDKVYDAVIP RNVRVSEAPS FGKPVLLYDL 240
  241 KCAGSQAYLK LAREVISRER DRQAKAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.39794
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits