YRC Public Data Repository - Protein Structure Prediction

Protein:	SO0870
Organism:	Shewanella oneidensis
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0870.

Description	E-value	Query Range	Subject Range
PANB_SHESM - 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Shewanella sp. (strain MR-4) GN=panB PE=3 SV=1	437.0	[0..1]	[264..1]
PANB_SHESR - 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Shewanella sp. (strain MR-7) GN=panB PE=3 SV=1	437.0	[0..1]	[264..1]
gi\|126175691, gi... - gi\|68543346\|ref\|ZP_00583054.1\| Ketopantoate hydroxymethyltransferase [Shewanella baltica OS155], gi\|... gi\|113948900, gi... - gi\|160874001\|ref\|YP_001553317.1\| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Shewanella baltic... gi\|151363999, gi... - gi\|152999381\|ref\|YP_001365062.1\| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Shewanella baltic... gi\|149116833, gi... - gi\|217972058\|ref\|YP_002356809.1\| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Shewanella baltic...	435.0	[0..1]	[264..1]
PANB_SHESA - 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Shewanella sp. (strain ANA-3) GN=panB PE=3 SV=1	434.0	[0..1]	[264..1]
PANB_SHELP - 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)...	433.0	[0..1]	[264..1]
gi\|68515580, gi\|... - gi\|68546769\|ref\|ZP_00586314.1\| Ketopantoate hydroxymethyltransferase [Shewanella amazonensis SB2B], ...	433.0	[0..1]	[264..16]
PANB_SHESW - 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=panB PE=3 SV=... gi\|124507580, gi... - gi\|124550168\|ref\|ZP_01707946.1\| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Shewanella putrefa... PANB_SHEPC - 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA...	431.0	[0..1]	[264..1]
PANB_SHEFN - 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=p...	431.0	[0..1]	[264..1]
gi\|88926139, gi\|... - gi\|88944133\|ref\|ZP_01147466.1\| Ketopantoate hydroxymethyltransferase [Desulfotomaculum reducens MI-1...	428.0	[0..2]	[264..3]
gi\|85859368, gi\|... - gi\|85859368\|ref\|YP_461570.1\| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Syntrophus aciditroph...	426.0	[0..2]	[263..14]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVTSSTLL KYKQEGRKFT ALTAYDASFA SAFDGEGIDV LLVGDSLGMV LQGHDDTLPV  60
   61 TTADIAYHTR CVRRGIERSL LIADMPFMSY ATPEQAMENA TTLMQAGANM VKLEGGHWLL 120
  121 ETVTKLTERG IPVCAHLGLT PQSVNVFGGF KVQGRDAENA QRIIDEAKAL EAAGAQLLVV 180
  181 ECIPASLATA ITQALTIPVI GIGAGATTDG QILVMHDVLG ISSGYIPRFS KNYLKQTGEI 240
  241 RSAVRAYIEE VANGSFPSAE HTFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	1m3uA
Description:	Ketopantoate hydroxymethyltransferase PanB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-methyl-2-oxobutanoate hydroxymethyltransferase activity	4.08693637310631	bayes_pls_golite062009
catalytic activity	2.59838799615646	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	2.05689968523792	bayes_pls_golite062009
transferase activity	1.07154136609184	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.646649320021871	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.366715189574293	bayes_pls_golite062009
oxo-acid-lyase activity	0.0960362356555544	bayes_pls_golite062009
carbon-carbon lyase activity	0.0846611486307003	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: