YRC Public Data Repository - Protein Structure Prediction

Protein:	PAAX_ECOLI
Organism:	Escherichia coli
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAAX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|33945690 - gi\|33945690\|emb\|CAE45100.1\| putative transcriptional repressor [Pseudomonas sp. Y2]	401.0	[0..1]	[304..4]
gi\|209911934, gi... - gi\|209918675\|ref\|YP_002292759.1\| transcriptional repressor for phenylacetic acid degradation PaaX [E... gi\|218360697, gi... - gi\|218553929\|ref\|YP_002386842.1\| DNA-binding transcriptional repressor of phenylacetic acid degradat... gi\|157159302, gi... - gi\|75190456\|ref\|ZP_00703723.1\| COG3327: Phenylacetic acid-responsive transcriptional repressor [Esch...	395.0	[0..1]	[316..1]
gi\|193062734, gi... - gi\|75259524\|ref\|ZP_00730843.1\| COG3327: Phenylacetic acid-responsive transcriptional repressor [Esch... gi\|194415956, gi... - gi\|75212812\|ref\|ZP_00712810.1\| COG3327: Phenylacetic acid-responsive transcriptional repressor [Esch...	393.0	[0..1]	[316..1]
gi\|26990004, gi\|... - gi\|26990004\|ref\|NP_745429.1\| PaaX family transcriptional regulator [Pseudomonas putida KT2440], gi\|2...	392.0	[0..1]	[304..4]
gi\|75239968, gi\|... - gi\|75239968\|ref\|ZP_00723929.1\| COG3327: Phenylacetic acid-responsive transcriptional repressor [Esch...	391.0	[0..1]	[316..1]
gi\|124527877, gi... - gi\|124527877\|ref\|ZP_01699266.1\| phenylacetic acid degradation operon negative regulatory protein Paa... gi\|170020265, gi... - gi\|170020265\|ref\|YP_001725219.1\| PaaX family transcriptional regulator [Escherichia coli ATCC 8739],... gi\|188490219, gi... - gi\|75515010\|ref\|ZP_00737214.1\| COG3327: Phenylacetic acid-responsive transcriptional repressor [Esch... gi\|75195516, gi\|... - gi\|75195516\|ref\|ZP_00705586.1\| COG3327: Phenylacetic acid-responsive transcriptional repressor [Esch...	391.0	[0..1]	[316..1]
gi\|104781865, gi... - gi\|95110852\|emb\|CAK15568.1\| transcriptional repressor for phenylacetic acid degradation [Pseudomonas... gi\|95110852 - gi\|95110852\|emb\|CAK15568.1\| transcriptional repressor for phenylacetic acid degradation [Pseudomonas...	390.0	[0..1]	[305..4]
gi\|83569247 - gi\|83569247\|ref\|ZP_00920704.1\| COG3327: Phenylacetic acid-responsive transcriptional repressor [Shig...	390.0	[0..1]	[316..1]
gi\|30316453 - gi\|30316453\|gb\|AAC24342.2\| PaaX [Pseudomonas putida]	390.0	[0..1]	[304..4]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLDTFIQH AVNAVPVSGT SLISSLYGDS LSHRGGEIWL GSLAALLEGL GFGERFVRTA  60
   61 LFRLNKEGWL DVSRIGRRSF YSLSDKGLRL TRRAESKIY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.25
Match:	2dqlA
Description:	No description for 2dqlA was found.

Predicted Domain #2

Region A:
Residues: [100-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAEQPAWDGK WLLLLSEGLD KSTLADVKKQ LIWQGFGALA PSLMASPSQK LADVQTLLHE  60
   61 AGVADNVICF EAQIPLALSR AALRARVEEC WHLTEQNAMY ETFIQSFRPL VPLLKEAADE 120
  121 LTPERAFHIQ LLLIHFYRRV VLKDPLLPEE LLPAHWAGHT ARQLCINIYQ RVAPAALAFV 180
  181 SEKGETSVGE LPAPGSLYFQ RFGGLNIEQE ALCQFIR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	90.60206
Match:	PF08223.2
Description:	No description for PF08223.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits