YRC Public Data Repository - Protein Structure Prediction

Protein:	PAAI_ECOLI
Organism:	Escherichia coli
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAAI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|119378098, gi... - gi\|69934786\|ref\|ZP_00629817.1\| Phenylacetic acid degradation-related protein [Paracoccus denitrifica...	126.0	[0..1]	[138..12]
gi\|191165045, gi... - gi\|75231836\|ref\|ZP_00718177.1\| COG2050: Uncharacterized protein, possibly involved in aromatic compo...	125.0	[0..1]	[140..1]
gi\|106761405, gi... - gi\|119944430\|ref\|YP_942110.1\| phenylacetic acid degradation protein PaaD [Psychromonas ingrahamii 37...	122.0	[0..3]	[139..6]
gi\|91799419, gi\|... - gi\|92116525\|ref\|YP_576254.1\| phenylacetic acid degradation protein PaaD [Nitrobacter hamburgensis X1...	122.0	[0..1]	[138..7]
gi\|68526672, gi\|... - gi\|94312095\|ref\|YP_585305.1\| phenylacetic acid degradation protein PaaD [Ralstonia metallidurans CH3...	122.0	[0..1]	[140..1]
gi\|89094980, gi\|... - gi\|89094980\|ref\|ZP_01167910.1\| phenylacetic acid degradation protein [Oceanospirillum sp. MED92], gi...	121.0	[0..3]	[138..18]
gi\|73542700, gi\|... - gi\|73542700\|ref\|YP_297220.1\| phenylacetic acid degradation-related protein:phenylacetic acid degrada...	121.0	[0..12]	[139..46]
gi\|254253349, gi... - gi\|84360645\|ref\|ZP_00985342.1\| COG2050: Uncharacterized protein, possibly involved in aromatic compo...	121.0	[0..2]	[139..12]
gi\|95110857 - gi\|95110857\|emb\|CAK15573.1\| phenylacetic acid degradation protein [Pseudomonas entomophila L48] gi\|104781870, gi... - gi\|95110857\|emb\|CAK15573.1\| phenylacetic acid degradation protein [Pseudomonas entomophila L48], gi\|...	121.0	[0..4]	[139..9]
gi\|76581528, gi\|... - gi\|76812075\|ref\|YP_334932.1\| phenylacetic acid degradation protein PaaI [Burkholderia pseudomallei 1...	120.0	[0..2]	[138..112]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHKAWQNAH AMYENDACAK ALGIDIISMD EGFAVVTMTV TAQMLNGHQS CHGGQLFSLA  60
   61 DTAFAYACNS QGLAAVASAC TIDFLRPGFA GDTLTATAQV RHQGKQTGVY DIEIVNQQQK 120
  121 TVALFRGKSH RIGGTITGEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1psuA
Description:	Phenylacetic acid degradation protein PaaI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11649534052993	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: