YRC Public Data Repository - Protein Structure Prediction

Protein:	PAAD_ECOLI
Organism:	Escherichia coli
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAAD_ECOLI.

Description	E-value	Query Range	Subject Range
paaD - paaD putative phenylacetic acid degradation protein PaaD 4261763:4262266 reverse MW:18110	216.0	[0..3]	[166..1]
gi\|2764826 - gi\|2764826\|emb\|CAA66093.1\| paaD [Escherichia coli]	214.0	[0..1]	[167..1]
gi\|75195508 - gi\|75195508\|ref\|ZP_00705578.1\| COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [Escheric...	214.0	[0..1]	[167..1]
gi\|75212803 - gi\|75212803\|ref\|ZP_00712801.1\| COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [Escheric... gi\|75190448 - gi\|75190448\|ref\|ZP_00703715.1\| COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [Escheric... gi\|75259516 - gi\|75259516\|ref\|ZP_00730835.1\| COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [Escheric... gi\|75239976 - gi\|75239976\|ref\|ZP_00723937.1\| COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [Escheric... gi\|75231841 - gi\|75231841\|ref\|ZP_00718182.1\| COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [Escheric...	213.0	[0..1]	[167..6]
gi\|86750748, gi\|... - gi\|86750748\|ref\|YP_487244.1\| phenylacetate-CoA oxygenase, PaaJ subunit [Rhodopseudomonas palustris H...	213.0	[0..3]	[166..1]
gi\|75515018 - gi\|75515018\|ref\|ZP_00737222.1\| COG2151: Predicted metal-sulfur cluster biosynthetic enzyme [Escheric...	213.0	[0..1]	[167..6]
gi\|27378005, gi\|... - gi\|27378005\|ref\|NP_769534.1\| putative phenylacetic acid degradation protein [Bradyrhizobium japonicu...	211.0	[0..3]	[166..1]
gi\|91976305, gi\|... - gi\|91976305\|ref\|YP_568964.1\| phenylacetate-CoA oxygenase, PaaJ subunit [Rhodopseudomonas palustris B...	209.0	[0..6]	[166..3]
sp\|P76080\|PAAD_ECOLI - Phenylacetic acid degradation protein paaD OS=Escherichia coli (strain K12) GN=paaD PE=2 SV=2 EG13738 - ring 1,2-phenylacetyl-CoA epoxidase subunit / Ring 1,2-phenylacetyl-CoA epoxidase possible subunit; ... gi\|188494214, gi... - gi\|188494214\|ref\|ZP_03001484.1\| phenylacetate-CoA oxygenase, gamma subunit [Escherichia coli 53638],... gi\|170081069, gi... - gi\|170081069\|ref\|YP_001730389.1\| multicomponent oxygenase/reductase subunit for phenylacetic acid de... EG13738 - ring 1,2-phenylacetyl-CoA epoxidase subunit / Ring 1,2-phenylacetyl-CoA epoxidase possible subunit; ... gi\|89108238, gi\|... - gi\|89108238\|ref\|AP_002018.1\| predicted multicomponent oxygenase/reductase subunit for phenylacetic a...	208.0	[0..3]	[167..1]
gi\|90422209, gi\|... - gi\|90422209\|ref\|YP_530579.1\| phenylacetate-CoA oxygenase, PaaJ subunit [Rhodopseudomonas palustris B...	205.0	[0..13]	[166..11]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMQRLATIA PPQVHEIWAL LSQIPDPEIP VLTITDLGMV RNVTQMGEGW VIGFTPTYSG  60
   61 CPATEHLIGA IREAMTTNGF TPVQVVLQLD PAWTTDWMTP DARERLREYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1uwdA
Description:	Conserved Hypothetical Protein TM0487 from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0204692195967625	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [111-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISPPAGHSCH AHLPPEVRCP RCASVHTTLI SEFGSTACKA LYRCDSCREP FDYFKCI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.786	N/A	N/A	a.60.2	RuvA domain 2-like
View	Download	0.388	N/A	N/A	a.60.1	SAM/Pointed domain
View	Download	0.311	N/A	N/A	a.60.1	SAM/Pointed domain
View	Download	0.310	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.278	N/A	N/A	a.61.1	Retroviral matrix proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: