YRC Public Data Repository - Protein Structure Prediction

Protein:	PAAA_ECOLI
Organism:	Escherichia coli
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAAA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|33576847, gi\|... - gi\|33602408\|ref\|NP_889968.1\| phenylacetate-CoA oxygenase subunit PaaA [Bordetella bronchiseptica RB5... gi\|33593652, gi\|... - gi\|33593652\|ref\|NP_881296.1\| phenylacetate-CoA oxygenase subunit PaaA [Bordetella pertussis Tohama I...	422.0	[0..3]	[309..22]
gi\|187477878, gi... - gi\|187477878\|ref\|YP_785902.1\| phenylacetic acid degradation protein [Bordetella avium 197N], gi\|1154...	419.0	[0..3]	[309..22]
gi\|33566075 - gi\|33566075\|emb\|CAE36974.1\| phenylacetic acid degradation protein [Bordetella parapertussis] gi\|33596306 - gi\|33596306\|ref\|NP_883949.1\| phenylacetate-CoA oxygenase subunit PaaA [Bordetella parapertussis 1282...	417.0	[0..9]	[309..26]
gi\|71906019, gi\|... - gi\|71906019\|ref\|YP_283606.1\| phenylacetate-CoA oxygenase subunit PaaA [Dechloromonas aromatica RCB],...	414.0	[0..4]	[308..29]
gi\|83856488, gi\|... - gi\|83856488\|ref\|ZP_00950017.1\| phenylacetic acid degradation protein [Croceibacter atlanticus HTCC25...	414.0	[0..4]	[309..10]
gi\|25333390 - pir\|\|G96036 probable phenylacetic acid degradation protein [imported] - Sinorhizobium meliloti (stra... gi\|15141447, gi\|... - gi\|16265307\|ref\|NP_438099.1\| phenylacetate-CoA oxygenase subunit PaaA [Sinorhizobium meliloti 1021],...	412.0	[0..2]	[307..21]
gi\|113529805, gi... - gi\|116695306\|ref\|YP_840882.1\| phenylacetate-CoA oxygenase subunit PaaA [Ralstonia eutropha H16], gi\|...	409.0	[0..2]	[309..21]
gi\|99078695, gi\|... - gi\|99078695\|ref\|YP_611953.1\| phenylacetate-CoA oxygenase subunit PaaA [Silicibacter sp. TM1040], gi\|...	407.0	[0..2]	[309..21]
gi\|150376289, gi... - gi\|150376289\|ref\|YP_001312885.1\| phenylacetate-CoA oxygenase subunit PaaA [Sinorhizobium medicae WSM...	407.0	[0..2]	[308..21]
gi\|91689438, gi\|... - gi\|91785484\|ref\|YP_560690.1\| phenylacetate-CoA oxygenase subunit PaaA [Burkholderia xenovorans LB400...	406.0	[0..2]	[307..22]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQEERFEQR IAQETAIEPQ DWMPDAYRKT LIRQIGQHAH SEIVGMLPEG NWITRAPTLR  60
   61 RKAILLAKVQ DEAGHGLYLY SAAETLGCAR EDIYQKMLDG RMKYSSIFNY PTLSWADIGV 120
  121 IGWLVDGAAI VNQVALCRTS YGPYARAMVK ICKEESFHQR QGFEACMALA QGSEAQKQML 180
  181 QDAINRFWWP ALMMFGPNDD NSPNSARSLT WKIKRFTNDE LRQRFVDNTV PQVEMLGMTV 240
  241 PDPDLHFDTE SGHYRFGEID WQEFNEVING RGICNQERLD AKRKAWEEGT WVREAALAHA 300
  301 QKQHARKVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.09691
Match:	1otkA
Description:	Structural Genomics, Protein paaC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.567768748506245	bayes_pls_golite062009
binding	0.493952400550559	bayes_pls_golite062009
oxidoreductase activity	0.47183650280775	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: