YRC Public Data Repository - Protein Structure Prediction

Protein:	PA2_APIDO
Organism:	Apis dorsata
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PA2_APIDO.

Description	E-value	Query Range	Subject Range
PA2_APIME - Phospholipase A2 OS=Apis mellifera PE=1 SV=3	203.0	[0..1]	[134..34]
gi\|7435005 - gi\|7435005\|pir\|\|A59055 phospholipase A2 (EC 3.1.1.4), venom - Indian honeybee	196.0	[0..1]	[134..1]
PA2_APICC - Phospholipase A2 OS=Apis cerana cerana PE=2 SV=1	196.0	[0..1]	[134..1]
gi\|108877321, gi... - gi\|157114360\|ref\|XP_001658059.1\| hypothetical protein AaeL_AAEL006826 [Aedes aegypti], gi\|108877321\|...	195.0	[0..2]	[134..129]
gi\|224994817, gi... - gi\|91083133\|ref\|XP_971093.1\| PREDICTED: similar to CG3009-PA [Tribolium castaneum], gi\|224994817\|ref...	194.0	[0..1]	[134..59]
gi\|73995445 - gi\|73995445\|ref\|XP_543487.2\| PREDICTED: similar to Group III secretory phospholipase A2 precursor (P...	192.0	[0..2]	[134..160]
gi\|68359336 - gi\|68359336\|ref\|XP_685055.1\| PREDICTED: similar to phospholipase A2, group III [Danio rerio]	191.0	[0..2]	[117..153]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIYPGTLWCG HGNVSSSPDE LGRFKHTDSC CRSHDMCPDV MSAGESKHGL TNTASHTRLS  60
   61 CDCDDKFYDC LKNSSDTISS YFVGEMYFNI LDTKCYKLEH PVTGCGKRTE GRCLNYTVDK 120
  121 SKPKVYQWFD LRKY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.522879
Match:	1pocA
Description:	CRYSTAL STRUCTURE OF BEE-VENOM PHOSPHOLIPASE A2 IN A COMPLEX WITH A TRANSITION-STATE ANALOGUE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits