YRC Public Data Repository - Protein Structure Prediction

Protein:	PA2BY_PROFL
Organism:	Trimeresurus flavoviridis
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PA2BY_PROFL.

Description	E-value	Query Range	Subject Range
PA2BW_PROFL - Basic phospholipase A2 PL-X' OS=Protobothrops flavoviridis PE=2 SV=1	194.0	[0..1]	[138..1]
PA2BB_GLOHA - Basic phospholipase A2 B OS=Gloydius halys PE=1 SV=2	193.0	[0..1]	[138..1]
gi\|45934756, gi\|... - gi\|45934756\|gb\|AAS79430.1\| phospholipase A2 [Sistrurus catenatus tergeminus], gi\|166012678\|gb\|ABY779...	193.0	[0..1]	[138..1]
gi\|50874410, gi\|... - gi\|50874410\|emb\|CAE47194.1\| ammodytin I2(E) isoform [Vipera aspis aspis], gi\|50874404\|emb\|CAE47191.1...	191.0	[0..1]	[138..1]
PA2N2_VIPAA - Neutral phospholipase A2 ammodytin I2 OS=Vipera ammodytes ammodytes PE=1 SV=2 gi\|50874406 - gi\|50874406\|emb\|CAE47192.1\| ammodytin I2(A) isoform [Vipera aspis zinnikeri] gi\|50874456, gi\|... - gi\|50874460\|emb\|CAE47219.1\| ammodytin I2(A) isoform [Vipera ammodytes ruffoi], gi\|50874456\|emb\|CAE47... gi\|6967298, gi\|5... - gi\|6967298\|emb\|CAA58840.1\| phospholipase a2 [Vipera ammodytes], gi\|5702036\|emb\|CAA40200.2\| phospholi... gi\|50874454, gi\|... - gi\|50874468\|emb\|CAE47223.1\| ammodytin I2(A) isoform [Vipera aspis aspis], gi\|50874454\|emb\|CAE47216.1... gi\|33187124 - gi\|33187124\|gb\|AAN59984.1\| ammodytin I2 [Vipera aspis] gi\|33187126, gi\|... - gi\|50874462\|emb\|CAE47220.1\| ammodytin I2(A) isoform [Vipera berus berus], gi\|50874418\|emb\|CAE47198.1...	191.0	[0..1]	[138..1]
PA2A1_TRIGA - Acidic phospholipase A2 1 OS=Trimeresurus gramineus PE=1 SV=3	191.0	[0..1]	[138..1]
PA2A_PROJR - Acidic phospholipase A2 jerdoxin OS=Protobothrops jerdonii PE=1 SV=1 PA2_TRIJE - Phospholipase A2 jerdoxin OS=Trimeresurus jerdonii PE=1 SV=1	191.0	[0..1]	[138..1]

Back

Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLWIMAVL LVGVEGHLLQ FRKMIKKMTG KEPIVSYAFY GCYCGKGGRG KPKDATDRCC  60
   61 FVHDCCYEKV TGCDPKWDYY TYSLENGDIV CGGDNPCTKV VCECDKAAAI CFRDNLKTYK 120
  121 KRYMTFPDIF CTDPTEKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.30103
Match:	1b4wA
Description:	Snake phospholipase A2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits