YRC Public Data Repository - Protein Structure Prediction

Protein:	PA2BW_PROFL
Organism:	Trimeresurus flavoviridis
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PA2BW_PROFL.

Description	E-value	Query Range	Subject Range
gi\|45934756, gi\|... - gi\|45934756\|gb\|AAS79430.1\| phospholipase A2 [Sistrurus catenatus tergeminus], gi\|166012678\|gb\|ABY779...	189.0	[0..1]	[138..1]
PA2BB_GLOHA - Basic phospholipase A2 B OS=Gloydius halys PE=1 SV=2	189.0	[0..1]	[138..1]
PA2BY_PROFL - Basic phospholipase A2 PL-Y OS=Protobothrops flavoviridis PE=1 SV=1	189.0	[0..1]	[138..1]
PA2B_BOTSC - Basic phospholipase A2 Bs-N6 OS=Bothriechis schlegelii PE=1 SV=1	189.0	[0..1]	[138..1]
PA2AH_CROVV - Acidic phospholipase A2 Cvv-E6h OS=Crotalus viridis viridis PE=2 SV=1	188.0	[0..1]	[138..1]
PA2A6_TRIGA - Acidic phospholipase A2 6 OS=Trimeresurus gramineus PE=3 SV=1	188.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLWIMAVL LVGVEGHLLQ FRKMIKKMTG KEPIVSYAFY GCYCGKGGRG KPKDATDRCC  60
   61 FVHDCCYEKV TGCDPKWDYY TYSSENGDIV CGGDNPCTKE VCECDKAAAI CFRDNLKTYK 120
  121 KRYMTFPDIF CTDPTEKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	1b4wA
Description:	Snake phospholipase A2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits