YRC Public Data Repository - Protein Structure Prediction

Protein:	PA2GC_RAT
Organism:	Rattus norvegicus
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PA2GC_RAT.

Description	E-value	Query Range	Subject Range
gi\|50874502 - gi\|50874502\|emb\|CAE47240.1\| ammodytin I2(C) isoform [Vipera ammodytes meridionalis]	172.0	[0..7]	[150..3]
gi\|50874508 - gi\|50874508\|emb\|CAE47243.1\| ammodytin I2(C) variant [Vipera ammodytes montandoni]	171.0	[0..7]	[150..3]
gi\|45934756, gi\|... - gi\|45934756\|gb\|AAS79430.1\| phospholipase A2 [Sistrurus catenatus tergeminus], gi\|166012678\|gb\|ABY779...	171.0	[0..8]	[150..4]
PA2BB_GLOHA - Basic phospholipase A2 B OS=Gloydius halys PE=1 SV=2	171.0	[0..7]	[150..3]
gi\|50874484, gi\|... - gi\|50874488\|emb\|CAE47233.1\| ammodytin I2(A') isoform [Vipera ammodytes ammodytes], gi\|50874484\|emb\|C...	170.0	[0..7]	[150..3]
gi\|50874466 - gi\|50874466\|emb\|CAE47222.1\| ammodytin I2(D) isoform [Vipera ursinii]	170.0	[0..7]	[150..3]
gi\|76676926 - gi\|76676926\|ref\|XP_582666.2\| PREDICTED: similar to Group IIE secretory phospholipase A2 precursor (P...	169.0	[0..20]	[150..312]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGIAVFLVF IFCWTTSTLS SFWQFQRMVK HITGRSAFFS YYGYGCYCGL GGRGIPVDAT  60
   61 DRCCWAHDCC YHKLKEYGCQ PILNAYQFAI VNGTVTCGCT MGGGCLCGQK ACECDKLSVY 120
  121 CFKENLATYE KTFKQLFPTR PQCGRDKLHC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.045757
Match:	1m8rA
Description:	Snake phospholipase A2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits