YRC Public Data Repository - Protein Structure Prediction

Protein:	PA2A2_NAJKA
Organism:	Naja kaouthia
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PA2A2_NAJKA.

Description	E-value	Query Range	Subject Range
PA2A1_NAJAT - Acidic phospholipase A2 1 OS=Naja atra PE=1 SV=2 gi\|395192 - gi\|395192\|emb\|CAA51694.1\| phospholipase a2 [Naja naja]	202.0	[0..1]	[146..1]
PA2AD_NAJSP - Acidic phospholipase A2 D OS=Naja sputatrix PE=1 SV=1	201.0	[0..1]	[146..1]
PA2A1_NAJKA - Acidic phospholipase A2 1 OS=Naja kaouthia PE=1 SV=2	200.0	[0..1]	[146..1]
PA2I_LATSE - Phospholipase A2 GL16-1 OS=Laticauda semifasciata PE=2 SV=1	197.0	[0..1]	[146..1]
PA2A6_TROCA - Acidic phospholipase A2 6 OS=Tropidechis carinatus PE=2 SV=1	194.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPAHLLILA AVCVSSLGAS SNRPMPLNLY QFKNMIQCTV PSRSWWDFAD YGCYCGRGGS  60
   61 GTPVDDLDRC CQVHDNCYNE AEKISGCWPY FKTYSYECSQ GTLTCKGGNN ACAAAVCDCD 120
  121 RLAAICFAGA PYNNNNYNID LKARCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	1gp7A
Description:	Snake phospholipase A2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits