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View Structure Prediction Details

Protein: OX26_RAT
Organism: Rattus norvegicus
Length: 124 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OX26_RAT.

Description E-value Query
Range
Subject
Range
gi|62871727 - gi|62871727|gb|AAH94274.1| Qrfp protein [Mus musculus]
190.0 [0..16] [124..16]
gi|73967934 - gi|73967934|ref|XP_850751.1| PREDICTED: similar to P518 precursor protein [Canis familiaris]
185.0 [0..10] [124..124]
gi|71682797 - gi|71682797|gb|AAI01129.1| Pyroglutamylated RFamide peptide [Homo sapiens]
184.0 [0..10] [124..11]
gi|114627226 - gi|114627226|ref|XP_001166241.1| PREDICTED: similar to preproQRFP [Pan troglodytes]
181.0 [0..10] [124..113]
OX26_BOVIN - Orexigenic neuropeptide QRFP OS=Bos taurus GN=QRFP PE=2 SV=1
173.0 [0..10] [124..11]
gi|109110018 - gi|109110018|ref|XP_001106500.1| PREDICTED: similar to RF(Arg-Phe)amide family 26 amino acid peptide...
172.0 [0..15] [124..16]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCLCSWLCL LLPLSACFPL LDRRGPTDIG DIGARMSWVQ LTEGHTPRSV QSPRPQALLV  60
   61 VAKEQQASRR EHTGFRLGRQ DSGSEATGFL PTDSEKASGP LGTLAEELSS YSRRKGGFSF 120
  121 RFGR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.311 a.29.12 Description not found.
View Download 0.237 a.4.5 "Winged helix" DNA-binding domain
View Download 0.237 a.4.5 "Winged helix" DNA-binding domain
View Download 0.227 a.253.1 Description not found.
View Download 0.215 c.23.1 CheY-like
View Download 0.208 d.58.8 Viral DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle