YRC Public Data Repository - Protein Structure Prediction

Protein:	OX26_BOVIN
Organism:	Bos taurus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OX26_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|73967934 - gi\|73967934\|ref\|XP_850751.1\| PREDICTED: similar to P518 precursor protein [Canis familiaris]	226.0	[0..1]	[134..114]
QRFP - pyroglutamylated RFamide peptide gi\|190692001, gi... - gi\|254071363\|gb\|ACT64441.1\| pyroglutamylated RFamide peptide protein [synthetic construct], gi\|19069...	222.0	[0..1]	[134..1]
gi\|114627226 - gi\|114627226\|ref\|XP_001166241.1\| PREDICTED: similar to preproQRFP [Pan troglodytes]	220.0	[0..1]	[134..103]
gi\|109110018 - gi\|109110018\|ref\|XP_001106500.1\| PREDICTED: similar to RF(Arg-Phe)amide family 26 amino acid peptide...	198.0	[0..1]	[134..1]
gi\|62871727 - gi\|62871727\|gb\|AAH94274.1\| Qrfp protein [Mus musculus]	173.0	[0..17]	[133..16]
OX26_RAT - Orexigenic neuropeptide QRFP OS=Rattus norvegicus GN=Qrfp PE=1 SV=1	171.0	[0..17]	[133..16]
OX26_PELES - Orexigenic neuropeptide 26RFa OS=Pelophylax esculentus PE=1 SV=1	48.0	[0..106]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPYSLPYL LFLPLGACFP VLDTEEPVDA VGGTGREMSW MDPARGRPFP WGSPGWPRAP  60
   61 YPHALLVTAK ELRASGKARA GFQLRLGRQD DGSEATGLLL GEAEKVGGLL GTLAEELNGY 120
  121 SRKKGGFSFR FGRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits