YRC Public Data Repository - Protein Structure Prediction

Protein:	OSTN_MOUSE
Organism:	Mus musculus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSTN_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114591162 - gi\|114591162\|ref\|XP_001144666.1\| PREDICTED: similar to osteocrin protein precursor [Pan troglodytes]	218.0	[0..1]	[130..45]
OSTN_RAT - Osteocrin OS=Rattus norvegicus GN=Ostn PE=2 SV=1	216.0	[0..1]	[130..1]
gi\|109053891 - gi\|109053891\|ref\|XP_001094278.1\| PREDICTED: similar to osteocrin [Macaca mulatta]	214.0	[0..1]	[130..1]
OSTN - osteocrin	213.0	[0..1]	[130..1]
gi\|74003617 - gi\|74003617\|ref\|XP_850347.1\| PREDICTED: similar to osteocrin [Canis familiaris]	202.0	[0..1]	[130..6]
gi\|76671357, gi\|... - gi\|76671357\|ref\|XP_588390.2\| PREDICTED: similar to osteocrin protein [Bos taurus], gi\|149642685\|ref\|...	196.0	[0..1]	[130..1]
gi\|55731404 - gi\|55731404\|emb\|CAH92416.1\| hypothetical protein [Pongo abelii] gi\|197101525 - gi\|197101525\|ref\|NP_001127550.1\| osteocrin [Pongo abelii]	179.0	[0..1]	[103..1]
gi\|37620139 - gi\|37620139\|gb\|AAQ94968.1\| osteocrin protein precursor [Python molurus bivittatus]	143.0	[0..45]	[130..1]
gi\|50752279 - gi\|50752279\|ref\|XP_422718.1\| PREDICTED: similar to osteocrin protein [Gallus gallus]	122.0	[0..1]	[130..1]
gi\|68380940 - gi\|68380940\|ref\|XP_693892.1\| PREDICTED: similar to osteocrin [Danio rerio]	107.0	[0..48]	[130..53]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDWRLASTH FILAMIVMLW GSGKAFSVDL ASQEFGTASL QSPPTAREEK SATELSAKLL  60
   61 RLDDLVSLEN DVFETKKKRS FSGFGSPLDR LSAGSVEHRG KQRKAVDHSK KRFGIPMDRI 120
  121 GRNRLSSSRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.546	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.391	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.383	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.382	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.345	a.60.9	lambda integrase-like, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits