YRC Public Data Repository - Protein Structure Prediction

Protein:	OSTCN_BISPR
Organism:	Bison priscus
Length:	49 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSTCN_BISPR.

Description	E-value	Query Range	Subject Range
OSTCN_BOVIN - Osteocalcin OS=Bos taurus GN=BGLAP PE=1 SV=2	97.0	[0..1]	[49..52]
CCDS1134.1_1 - null OSTCN_MACNE - Osteocalcin OS=Macaca nemestrina GN=BGLAP PE=3 SV=1 OSTCN_MACMU - Osteocalcin OS=Macaca mulatta GN=BGLAP PE=3 SV=1 OSTCN_ATEGE - Osteocalcin OS=Ateles geoffroyi GN=BGLAP PE=3 SV=1	96.0	[0..1]	[49..52]
BGLAP, OSTC - oligosaccharyltransferase complex subunit, bone gamma-carboxyglutamate (gla) protein OSTCN_GORGO - Osteocalcin OS=Gorilla gorilla gorilla GN=BGLAP PE=1 SV=2 gi\|120974391 - gi\|120974391\|gb\|ABM46680.1\| BGLAP [Gorilla gorilla]	95.0	[0..1]	[49..52]
gi\|89994012, gi\|... - gi\|90962984\|ref\|NP_001035098.1\| bone gamma-carboxyglutamate (gla) protein [Ovis aries], gi\|89994012\|...	94.0	[0..1]	[49..51]
gi\|73961569 - gi\|73961569\|ref\|XP_547536.2\| PREDICTED: similar to Osteocalcin precursor (Gamma-carboxyglutamic acid...	94.0	[0..1]	[49..55]
OSTCN_MACFA - Osteocalcin OS=Macaca fascicularis GN=BGLAP PE=1 SV=1	89.0	[0..1]	[49..1]
OSTCN_RAT - Osteocalcin OS=Rattus norvegicus GN=Bglap PE=1 SV=1	89.0	[0..1]	[48..50]
OSTCN_HORSE - Osteocalcin OS=Equus caballus GN=BGLAP PE=1 SV=1	89.0	[0..1]	[49..1]
OSTC_GORGO - Osteocalcin (Gamma-carboxyglutamic acid-containing protein) (Bone Gla-protein) (BGP) - Gorilla goril...	89.0	[0..1]	[49..1]

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Predicted Domain #1

Region A:
Residues: [1-49]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLDHGLGAPA PYPDPLEPKR EVCELNPDCD ELADHIGFQE AYRRFYGPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.418	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.418	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.400	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.400	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.354	a.4.1	Homeodomain-like
View	Download	0.318	a.159.2	FF domain
View	Download	0.303	g.41.11	Znf265, first zinc-finger domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits