YRC Public Data Repository - Protein Structure Prediction

Protein:	OREX_PIG
Organism:	Sus scrofa
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OREX_PIG.

Description	E-value	Query Range	Subject Range
gi\|76644868 - gi\|76644868\|ref\|XP_609741.2\| PREDICTED: hypocretin (orexin) neuropeptide precursor [Bos taurus]	179.0	[0..1]	[131..1]
gi\|109115468 - gi\|109115468\|ref\|XP_001108991.1\| PREDICTED: similar to orexin precursor [Macaca mulatta]	178.0	[0..1]	[131..1]
OREX_CANLF - Orexin OS=Canis lupus familiaris GN=HCRT PE=3 SV=1	174.0	[0..1]	[131..1]
OREX_RAT - Orexin OS=Rattus norvegicus GN=Hcrt PE=1 SV=1	172.0	[0..1]	[131..1]
OREX_MOUSE - Orexin OS=Mus musculus GN=Hcrt PE=2 SV=1	169.0	[0..1]	[131..1]
gi\|108752126, gi... - gi\|208966520\|dbj\|BAG73274.1\| hypocretin (orexin) neuropeptide precursor [synthetic construct], gi\|10... HCRT - hypocretin (orexin) neuropeptide precursor	167.0	[0..1]	[131..1]
gi\|6690613 - gi\|6690613\|gb\|AAF24216.1\|AF169352_2 prepro-orexin precursor [Sus scrofa]	167.0	[0..3]	[131..1]
gi\|114667299 - gi\|114667299\|ref\|XP_001166578.1\| PREDICTED: orexin [Pan troglodytes]	163.0	[0..1]	[131..1]
gi\|45383750, gi\|... - gi\|45383750\|ref\|NP_989516.1\| hypocretin (orexin) neuropeptide [Gallus gallus], gi\|26453322\|dbj\|BAC43...	146.0	[0..34]	[130..29]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPPFAKVSW ATVTLLLLLL LLPPAVLSPG AAAQPLPDCC RQKTCSCRLY ELLHGAGNHA  60
   61 AGILTLGKRR PGPPGLQGRL QRLLQASGNH AAGILTMGRR AGAEPAPRLC PGRRCLAAAA 120
  121 SSVAPGGRSG I

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	103.09691
Match:	PF02072.6
Description:	No description for PF02072.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits