YRC Public Data Repository - Protein Structure Prediction

Protein:	OREX_CANLF
Organism:	Canis lupus familiaris
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OREX_CANLF.

Description	E-value	Query Range	Subject Range
OREX_MOUSE - Orexin OS=Mus musculus GN=Hcrt PE=2 SV=1	177.0	[0..1]	[130..1]
gi\|76644868 - gi\|76644868\|ref\|XP_609741.2\| PREDICTED: hypocretin (orexin) neuropeptide precursor [Bos taurus]	174.0	[0..1]	[130..1]
gi\|109115468 - gi\|109115468\|ref\|XP_001108991.1\| PREDICTED: similar to orexin precursor [Macaca mulatta]	173.0	[0..1]	[130..1]
OREX_RAT - Orexin OS=Rattus norvegicus GN=Hcrt PE=1 SV=1	171.0	[0..1]	[130..1]
OREX_PIG - Orexin OS=Sus scrofa GN=HCRT PE=2 SV=1	167.0	[0..1]	[130..1]
gi\|114667299 - gi\|114667299\|ref\|XP_001166578.1\| PREDICTED: orexin [Pan troglodytes]	165.0	[0..1]	[130..1]
gi\|108752126, gi... - gi\|208966520\|dbj\|BAG73274.1\| hypocretin (orexin) neuropeptide precursor [synthetic construct], gi\|10... HCRT - hypocretin (orexin) neuropeptide precursor	162.0	[0..1]	[130..1]
gi\|45383750, gi\|... - gi\|45383750\|ref\|NP_989516.1\| hypocretin (orexin) neuropeptide [Gallus gallus], gi\|26453322\|dbj\|BAC43...	145.0	[0..33]	[129..29]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPPSTKVPW AAVTLLLLLL LPPALLSPGA AAQPLPDCCR QKTCSCRLYE LLHGAGNHAA  60
   61 GILTLGKRRP GPPGLQGRLQ RLLQASGNHA AGILTMGRRA GAEPAPRPCP GRRCPVVAVP 120
  121 SAAPGGRSGV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	96.677781
Match:	PF02072.6
Description:	No description for PF02072.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.205	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits