YRC Public Data Repository - Protein Structure Prediction

Protein:	PUUB_ECOLI, ORDL...
Organism:	Escherichia coli
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUUB_ECOLI, ORDL....

Description	E-value	Query Range	Subject Range
gi\|75240054, gi\|... - gi\|75240054\|ref\|ZP_00724015.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col...	357.0	[0..1]	[426..1]
gi\|124531750, gi... - gi\|124531750\|ref\|ZP_01701899.1\| FAD dependent oxidoreductase [Escherichia coli B], gi\|124498396\|gb\|E... gi\|157157224, gi... - gi\|75190387\|ref\|ZP_00703654.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... gi\|170020332, gi... - gi\|170020332\|ref\|YP_001725286.1\| FAD dependent oxidoreductase [Escherichia coli ATCC 8739], gi\|16975...	357.0	[0..1]	[426..1]
gi\|170517401, gi... - gi\|170679683\|ref\|YP_001743875.1\| gamma-glutamylputrescine oxidoreductase [Escherichia coli SMS-3-5],... gi\|218553859, gi... - gi\|218553859\|ref\|YP_002386772.1\| gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding [Escherichia coli ... gi\|75259413, gi\|... - gi\|75259413\|ref\|ZP_00730732.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... gi\|191164996, gi... - gi\|75231902\|ref\|ZP_00718243.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col... gi\|194415843, gi... - gi\|75212740\|ref\|ZP_00712738.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Escherichia col...	357.0	[0..1]	[426..1]
gi\|83569474, gi\|... - gi\|83569474\|ref\|ZP_00920927.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Shigella dysent...	357.0	[0..1]	[426..1]
gi\|74312329, gi\|... - gi\|74312329\|ref\|YP_310748.1\| oxidoreductase [Shigella sonnei Ss046], gi\|73855806\|gb\|AAZ88513.1\| prob...	356.0	[0..1]	[426..1]
gi\|110805304, gi... - gi\|110805304\|ref\|YP_688824.1\| oxidoreductase [Shigella flexneri 5 str. 8401], gi\|110614852\|gb\|ABF035...	356.0	[0..1]	[426..1]
gi\|82777189, gi\|... - gi\|82777189\|ref\|YP_403538.1\| oxidoreductase [Shigella dysenteriae Sd197], gi\|81241337\|gb\|ABB62047.1\|...	356.0	[0..1]	[426..1]
gi\|187733680, gi... - gi\|75179044\|ref\|ZP_00699062.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Shigella boydii...	355.0	[0..1]	[426..1]
gi\|168762684, gi... - gi\|189367075\|gb\|EDU85491.1\| gamma-glutamylputrescine oxidoreductase [Escherichia coli O157:H7 str. E... gi\|13361343, gi\|... - gi\|15831132\|ref\|NP_309905.1\| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai], gi\|13361... gi\|217329224, gi... - gi\|217329224\|ref\|ZP_03445304.1\| gamma-glutamylputrescine oxidoreductase [Escherichia coli O157:H7 st... gi\|25323931, gi\|... - pir\|\|C85755 probable oxidoreductase ordL [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|12515473, gi\|... - gi\|15801867\|ref\|NP_287887.1\| oxidoreductase [Escherichia coli O157:H7 EDL933], gi\|12515473\|gb\|AAG565... gi\|13361343, gi\|... - gi\|15831132\|ref\|NP_309905.1\| putative oxidoreductase [Escherichia coli O157:H7], gi\|13361343\|dbj\|BAB...	355.0	[0..1]	[426..1]
gi\|24051619, gi\|... - gi\|24112700\|ref\|NP_707210.1\| oxidoreductase [Shigella flexneri 2a str. 301], gi\|24051619\|gb\|AAN42917... gi\|30041069, gi\|... - gi\|30062821\|ref\|NP_836992.1\| oxidoreductase [Shigella flexneri 2a str. 2457T], gi\|30041069\|gb\|AAP167...	354.0	[0..1]	[426..1]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEHTSSYYA ASANKYAPFD TLNESITCDV CVVGGGYTGL SSALHLAEAG FDVVVLEASR  60
   61 IGFGASGRNG GQLVNSYSRD IDVIEKSYGM DTARMLGSMM FEGGEIIRER IKRYQIDCDY 120
  121 RPGGLFVAMN DKQLATLEEQ KENWERYGNK QLELLDANAI RREVASDRYT GALLDHSGGH 180
  181 IHPLNLAIGE ADAIRLNGGR VYELSAVTQI QHTTPAVVRT AKGQVTAKYV IVAGNAYLGD 240
  241 KVEPELAKRS MPCGTQVITT ERLSEDLARS LIPKNYCVED CNYLLDYYRL TADNRLLYGG 300
  301 GVVYGARDPD DVERLVVPKL LKTFPQLKGV KIDYRWTGNF LLTLSRMPQF GRLDTNIYYM 360
  361 QGYSGHGVTC THLAGRLIAE LLRGDAERFD AFANLPHYPF PGGRTLRVPF TAMGAAYYSL 420
  421 RDRLGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	2gagB
Description:	No description for 2gagB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits