YRC Public Data Repository - Protein Structure Prediction

Protein:	OPGC_ECOLI
Organism:	Escherichia coli
Length:	385 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OPGC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|68536583, gi\|... - gi\|68536583\|ref\|YP_251288.1\| hypothetical protein jk1497 [Corynebacterium jeikeium K411], gi\|6826418...	193.0	[0..3]	[366..351]
YRHL_BACSU - Putative peptidoglycan O-acetyltransferase YrhL OS=Bacillus subtilis (strain 168) GN=yrhL PE=3 SV=1 YRHL_BACSU - Putative peptidoglycan O-acetyltransferase YrhL OS=Bacillus subtilis GN=yrhL PE=3 SV=1 gi\|221319894 - gi\|221319894\|ref\|ZP_03601188.1\| hypothetical protein BsubsJ_14663 [Bacillus subtilis subsp. subtilis... gi\|221324174 - gi\|221324174\|ref\|ZP_03605468.1\| hypothetical protein BsubsS_14802 [Bacillus subtilis subsp. subtilis... gi\|221314972 - gi\|221314972\|ref\|ZP_03596777.1\| hypothetical protein BsubsN3_14747 [Bacillus subtilis subsp. subtili...	167.0	[0..3]	[374..5]
gi\|125980742, gi... - gi\|54642702\|gb\|EAL31447.1\| GA15974-PA [Drosophila pseudoobscura], gi\|125980742\|ref\|XP_001354394.1\| G...	164.0	[0..5]	[381..291]
gi\|52784410, gi\|... - gi\|52784410\|ref\|YP_090239.1\| YrhL [Bacillus licheniformis ATCC 14580], gi\|52346912\|gb\|AAU39546.1\| Yr...	163.0	[0..2]	[365..4]
gi\|68368099 - gi\|68368099\|ref\|XP_688314.1\| PREDICTED: similar to heart alpha-kinase [Danio rerio]	163.0	[0..9]	[361..219]
gi\|57636249, gi\|... - gi\|57865591\|ref\|YP_189693.1\| hypothetical protein SERP2137 [Staphylococcus epidermidis RP62A], gi\|57... gi\|251804734, gi... - gi\|251811754\|ref\|ZP_04826227.1\| acyltransferase [Staphylococcus epidermidis BCM-HMP0060], gi\|2518047...	158.0	[0..5]	[365..14]
gi\|27316592, gi\|... - gi\|27469043\|ref\|NP_765680.1\| acyltransferase [Staphylococcus epidermidis ATCC 12228], gi\|27316592\|gb...	158.0	[0..5]	[365..14]
gi\|68197381, gi\|... - gi\|68234999\|ref\|ZP_00574044.1\| Acyltransferase 3 [Frankia sp. EAN1pec], gi\|68197381\|gb\|EAN11708.1\| A...	158.0	[0..4]	[379..312]
gi\|110757630 - gi\|110757630\|ref\|XP_394861.3\| PREDICTED: similar to CG3106-PA [Apis mellifera]	157.0	[0..9]	[372..405]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPVPAQREY FLDSIRAWLM LLGIPFHISL IYSSHTWHVN SAESSLWLTL FNDFIHSFRM  60
   61 QVFFVISGYF SYMLFLRYPL KKWWKVRVER VGIPMLTAIP LLTLPQFIML QYVKGKAESW 120
  121 PGLSLYDKYN TLAWELISHL WFLLVLVVMT TLCVWIFKRI RNNLENSDKT NKKFSMVKLS 180
  181 VIFLCLGIGY AVIRRTIFIV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [201-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPPILSNGMF NFIVMQTLFY LPFFILGALA FIFPHLKALF TTPSRGCTLA AALAFVAYLL  60
   61 NQRYGSGDAW MYETESVITM VLGLWMVNVV FSFGHRLLNF QSARVTYFVN ASLFIYLVHH 120
  121 PLTLFFGAYI TPHITSNWLG FLCGLIFVVG IAIILYEIHL RIPLLKFLFS GKPVVKREND 180
  181 KAPAR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits