YRC Public Data Repository - Protein Structure Prediction

Protein:	NUSB_BACCR
Organism:	Bacillus cereus ATCC 14579
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUSB_BACCR.

Description	E-value	Query Range	Subject Range
gi\|49080752 - gi\|49080752\|gb\|AAT50054.1\| PA4052 [synthetic construct]	145.0	[0..3]	[130..21]
gi\|94417012, gi\|... - gi\|94417012\|ref\|ZP_01296834.1\| hypothetical protein PaerP_01001208 [Pseudomonas aeruginosa PA7], gi\|...	145.0	[0..3]	[130..21]
NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|46164642, gi\|... - gi\|46164642\|ref\|ZP_00205138.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa UCB... gi\|84325185, gi\|... - gi\|84325185\|ref\|ZP_00973225.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa 219... gi\|107103566 - gi\|107103566\|ref\|ZP_01367484.1\| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi\|218889667, gi... - gi\|218889667\|ref\|YP_002438531.1\| transcription antitermination protein NusB [Pseudomonas aeruginosa ... NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa GN=nusB PE=3 SV=1	145.0	[0..3]	[130..21]
NUSB_BACCN - N utilization substance protein B homolog OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 3...	144.0	[0..1]	[130..1]
gi\|126168872, gi... - gi\|84319131\|ref\|ZP_00967534.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa C37...	144.0	[0..3]	[130..21]
NUSB_SHELP - N utilization substance protein B homolog OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=nus...	143.0	[0..3]	[127..6]
NUSB_BACSU - N utilization substance protein B homolog OS=Bacillus subtilis GN=nusB PE=3 SV=1 gi\|16079488, gi\|... - gi\|2634866\|emb\|CAB14363.1\| nusB [Bacillus subtilis subsp. subtilis str. 168], gi\|16079488\|ref\|NP_390...	142.0	[0..1]	[130..1]
NUSB_SHESW - N utilization substance protein B homolog OS=Shewanella sp. (strain W3-18-1) GN=nusB PE=3 SV=1	141.0	[0..3]	[129..6]
NUSB_BACLD - N utilization substance protein B homolog OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JC...	141.0	[0..1]	[130..1]
NUSB_CLOTH - N utilization substance protein B homolog OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 ...	140.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRTARERA MQALYQMDIT GELEPKVAVE NTLDEGEETN EFLESLVVGF VENKEAIDEA  60
   61 IRQNLKKWKL ERISIVDRSI LRVAVYEMKY MEEIPHNVTI NEAIEIAKTF GDEESRRFIN 120
  121 GVLSNIKDTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1ey1A
Description:	Antitermination factor NusB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits