YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NUOM_ECOLI
Organism: Escherichia coli
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOM_ECOLI.

Description E-value Query
Range
Subject
Range
gi|5817414 - gi|5817414|gb|AAD52750.1|AF123692_1 NADH dehydrogenase [Tetranema mexicanum]
385.0 [0..1] [508..2]
gi|49523517 - gi|49523517|emb|CAE85004.1| NADH dehydrogenase [Ixianthes retzioides]
383.0 [0..1] [508..1]
gi|2605771, gi|7... - pir||T12227 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Retzia capensis chloroplast (fra...
382.0 [0..1] [508..10]
gi|62899393 - gi|62899393|gb|AAY18626.1| NADH dehydrogenase subunit F [Synapsis ilicifolia]
381.0 [0..1] [508..2]
gi|6684547 - gi|6684547|gb|AAF23620.1| NADH dehydrogenase [Halleria lucida]
381.0 [0..1] [508..2]
gi|62899391 - gi|62899391|gb|AAY18625.1| NADH dehydrogenase subunit F [Ceratotheca triloba]
380.0 [0..1] [508..2]
gi|62899399 - gi|62899399|gb|AAY18629.1| NADH dehydrogenase subunit F [Thomandersia laurifolia]
379.0 [0..1] [508..2]
gi|695288 - gi|695288|gb|AAA84038.1| NADH dehydrogenase subunit [Buddleja davidii]
379.0 [0..1] [508..2]
gi|7520640, gi|2... - pir||T12225 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Stilbe albiflora chloroplast (fr...
379.0 [0..1] [508..10]

Back

Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPWLILIP FIGGFLCWQT ERFGVKVPRW IALITMGLTL ALSLQLWLQG GYSLTQSAGI  60
   61 PQWQSEFDMP WIPRFGISIH LAIDGLSLLM VVLTGLLGVL AVLCSWKEIE KYQGFFHLNL 120
  121 MWILGGVIGV FLAIDMFLFF FFWEMMLVPM YFLIALWGHK ASDGKTRITA ATKFFIYTQA 180
  181 SGLVMLIAIL ALVFVHYNAT GVWTFNYEEL LNTPMSSGVE YLLMLGFFIA FAVKMPVVPL 240
  241 HGWLPDAHSQ APTAGSVDLA GILLKTAAYG LLRFSLPL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [279-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPNASAEFAP IAMWLGVIGI FYGAWMAFAQ TDIKRLIAYT SVSHMGFVLI AIYTGSQLAY  60
   61 QGAVIQMIAH GLSAAGLFIL CGQLYERIHT RDMRMMGGLW SKMKWLPALS LFFAVATLGM 120
  121 PGTGNFVGEF MILFGSFQVV PVITVISTFG LVFASVYSLA MLHRAYFGKA KSQIASQELP 180
  181 GMSLRELFMI LLLVVLLVLL GFYPQPILDT SHSAIGNIQQ WFVNSVTTTR P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle