YRC Public Data Repository - Protein Structure Prediction

Protein:	NUOA_ECOLI
Organism:	Escherichia coli
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|78695248, gi\|... - gi\|78695248\|ref\|ZP_00859760.1\| similar to NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Bradyr...	159.0	[0..6]	[125..44]
gi\|12516641, gi\|... - gi\|15802835\|ref\|NP_288862.1\| NADH dehydrogenase subunit A [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|25285105 - gi\|25285105\|pir\|\|E85869 NADH dehydrogenase I chain A [imported] - Escherichia coli (strain O157:H7,...	157.0	[0..1]	[147..1]
NUOA_SALCH - NADH-quinone oxidoreductase subunit A OS=Salmonella choleraesuis (strain SC-B67) GN=nuoA PE=3 SV=1 NUOA_SALG2 - NADH-quinone oxidoreductase subunit A OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nuoA ... NUOA_SALPA - NADH-quinone oxidoreductase subunit A OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nuoA ... NUOA_SALEP - NADH-quinone oxidoreductase subunit A OS=Salmonella enteritidis PT4 (strain P125109) GN=nuoA PE=3 SV... gi\|213022739 - gi\|213022739\|ref\|ZP_03337186.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... gi\|213052943 - gi\|213052943\|ref\|ZP_03345821.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... NUOA_SALPK - NADH-quinone oxidoreductase subunit A OS=Salmonella paratyphi A (strain AKU_12601) GN=nuoA PE=3 SV=1 NUOA_SALDC - NADH-quinone oxidoreductase subunit A OS=Salmonella dublin (strain CT_02021853) GN=nuoA PE=3 SV=1 gi\|200387246, gi... - gi\|200387246\|ref\|ZP_03213858.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. e... gi\|204929296, gi... - gi\|204929296\|ref\|ZP_03220439.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. e... gi\|194458893, gi... - gi\|194472529\|ref\|ZP_03078513.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. e... NUOA_SALSV - NADH-quinone oxidoreductase subunit A OS=Salmonella schwarzengrund (strain CVM19633) GN=nuoA PE=3 SV... NUOA_SALA4 - NADH-quinone oxidoreductase subunit A OS=Salmonella agona (strain SL483) GN=nuoA PE=3 SV=1 gi\|197264848, gi... - gi\|197264848\|ref\|ZP_03164922.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. e... gi\|195631248, gi... - gi\|195631248\|gb\|EDX49808.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. enter... NUOA_SALTY - NADH-quinone oxidoreductase subunit A OS=Salmonella typhimurium GN=nuoA PE=3 SV=1 gi\|205345007, gi... - gi\|205345007\|gb\|EDZ31771.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. enter... NUOA_SALNS - NADH-quinone oxidoreductase subunit A OS=Salmonella newport (strain SL254) GN=nuoA PE=3 SV=1 NUOA_SALHS - NADH-quinone oxidoreductase subunit A OS=Salmonella heidelberg (strain SL476) GN=nuoA PE=3 SV=1 NUOA_SALCH - NADH-quinone oxidoreductase subunit A OS=Salmonella choleraesuis GN=nuoA PE=3 SV=1 NUOA_SALTY - NADH-quinone oxidoreductase subunit A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720... gi\|29141051, gi\|... - gi\|29141051\|ref\|NP_804393.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica serov... NUOA_SALTI - NADH-quinone oxidoreductase subunit A OS=Salmonella typhi GN=nuoA PE=3 SV=1 gi\|81706882 - gi\|81706882\|sp\|Q7CQ49.1\|NUOA_SALTY RecName: Full=NADH-quinone oxidoreductase subunit A; AltName: Ful... NUOA_SALPB - NADH-quinone oxidoreductase subunit A OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nuo... gi\|81766267 - gi\|81766267\|sp\|Q8XFY2.1\|NUOA_SALTI RecName: Full=NADH-quinone oxidoreductase subunit A; AltName: Ful... gi\|16761253 - gi\|16761253\|ref\|NP_456870.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica serov... gi\|213647304 - gi\|213647304\|ref\|ZP_03377357.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... gi\|214002001 - gi\|214002001\|ref\|ZP_03412736.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=nuoA] [protein=NADH dehydrogenase subunit A] [protein_id=YP_005238404.1] [location=complement(... gi\|75505655 - gi\|75505655\|sp\|Q57M28.1\|NUOA_SALCH RecName: Full=NADH-quinone oxidoreductase subunit A; AltName: Ful... NUOA_SALPA - NADH-quinone oxidoreductase subunit A OS=Salmonella paratyphi A GN=nuoA PE=3 SV=1 gi\|213420338 - gi\|213420338\|ref\|ZP_03353404.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... gi\|238912393 - gi\|238912393\|ref\|ZP_04656230.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... gi\|213427011 - gi\|213427011\|ref\|ZP_03359761.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... gi\|213581021 - gi\|213581021\|ref\|ZP_03362847.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... gi\|213610192 - gi\|213610192\|ref\|ZP_03370018.1\| NADH dehydrogenase subunit A [Salmonella enterica subsp. enterica se... gi\|168229697, gi... - gi\|205335825\|gb\|EDZ22589.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. enter... gi\|197289662, gi... - gi\|197289662\|gb\|EDY29025.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. enter... gi\|205338425, gi... - gi\|205338425\|gb\|EDZ25189.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. enter... gi\|168261656, gi... - gi\|205349376\|gb\|EDZ36007.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. enter... NUOA_SALAR - NADH-quinone oxidoreductase subunit A OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2... NUOA_SALPB - NADH-quinone oxidoreductase subunit A OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nuo... gi\|167549673, gi... - gi\|205325242\|gb\|EDZ13081.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. enter... gi\|167994676, gi... - gi\|205327489\|gb\|EDZ14253.1\| NADH-quinone oxidoreductase, A subunit [Salmonella enterica subsp. enter...	157.0	[0..1]	[147..1]
gi\|110680472, gi... - gi\|110680472\|ref\|YP_683479.1\| NADH dehydrogenase subunit A [Roseobacter denitrificans OCh 114], gi\|1...	157.0	[0..6]	[125..1]
gi\|85825936, gi\|... - gi\|86137601\|ref\|ZP_01056178.1\| NADH dehydrogenase alpha subunit [Roseobacter sp. MED193], gi\|8582593...	157.0	[0..6]	[125..1]
gi\|83953914, gi\|... - gi\|83953914\|ref\|ZP_00962635.1\| NADH dehydrogenase alpha subunit [Sulfitobacter sp. NAS-14.1], gi\|838... gi\|83942675, gi\|... - gi\|83942675\|ref\|ZP_00955136.1\| NADH dehydrogenase alpha subunit [Sulfitobacter sp. EE-36], gi\|838467...	156.0	[0..6]	[125..1]
gi\|75238071 - gi\|75238071\|ref\|ZP_00722076.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric...	156.0	[0..3]	[147..1]
gi\|38704072 - gi\|38704072\|ref\|NP_311199.2\| NADH dehydrogenase subunit A [Escherichia coli O157:H7 str. Sakai] gi\|75187070 - gi\|75187070\|ref\|ZP_00700337.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75196331 - gi\|75196331\|ref\|ZP_00706401.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75211691 - gi\|75211691\|ref\|ZP_00711770.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75230331 - gi\|75230331\|ref\|ZP_00716821.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|194433296, gi... - gi\|194433296\|ref\|ZP_03065576.1\| NADH-quinone oxidoreductase, A subunit [Shigella dysenteriae 1012], ... gi\|75243099 - gi\|75243099\|ref\|ZP_00726805.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|33347643\|ref\|... - NADH dehydrogenase I chain A [Escherichia coli K12], NADH dehydrogenase I chain A [Escherichia coli ... gi\|75259746 - gi\|75259746\|ref\|ZP_00731048.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75512760 - gi\|75512760\|ref\|ZP_00735262.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|83588271 - gi\|83588271\|ref\|ZP_00926896.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75177924 - gi\|75177924\|ref\|ZP_00697986.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Shigella... gi\|38704072 - gi\|38704072\|ref\|NP_311199.2\| NADH dehydrogenase alpha subunit [Escherichia coli O157:H7]	155.0	[0..3]	[147..1]
gi\|114542918, gi... - gi\|114764718\|ref\|ZP_01443903.1\| NADH dehydrogenase alpha subunit [Roseovarius sp. HTCC2601], gi\|1145...	155.0	[0..6]	[125..1]
gi\|110829209, gi... - gi\|121609762\|ref\|YP_997569.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Verminephrobact...	155.0	[0..7]	[125..17]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSTSTEVI AHHWAFAIFL IVAIGLCCLM LVGGWFLGGR ARARSKNVPF ESGIDSVGSA  60
   61 RLRLSAKFYL VAMFFVIFDV EALYLFAWST SIRESGWVGF VEAAIFIFVL LAGLVYLVRI 120
  121 GALDWTPARS RRERMNPETN SIANRQR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.721246
Match:	PF00507.10
Description:	No description for PF00507.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.920	0.075	mitochondrial electron transport, NADH to ubiquinone	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits