YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUS6_BOVIN
Organism:	Bos taurus
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUS6_BOVIN.

Description	E-value	Query Range	Subject Range
NDUS6_PANTR - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan troglodytes GN=NDUFS6 PE... NDUFS6 - NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)	187.0	[0..1]	[124..1]
gi\|111661843 - gi\|111661843\|gb\|ABH12167.1\| mitochondrial complex I subunit NDUFS6 [Gorilla gorilla] NDUS6_GORGO - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Gorilla gorilla gorilla GN=N...	184.0	[0..1]	[123..1]
NDUS6_PONPY - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=... NDUS6_PONAB - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo abelii GN=NDUFS6 PE=2 ...	184.0	[0..1]	[124..1]
gi\|109080210 - gi\|109080210\|ref\|XP_001105649.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein ...	184.0	[0..1]	[124..1]
NDUS6_MACFA - NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Macaca fascicularis GN=NDUFS...	182.0	[0..1]	[124..1]
gi\|74003113 - gi\|74003113\|ref\|XP_535802.2\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 6, 1...	179.0	[0..1]	[124..72]
gi\|82913708, gi\|... - gi\|82913708\|ref\|XP_909811.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 6 [M...	178.0	[0..1]	[124..1]
gi\|109504524, gi... - gi\|149032791\|gb\|EDL87646.1\| rCG41951, isoform CRA_a [Rattus norvegicus], gi\|109504524\|ref\|XP_0010530...	177.0	[0..1]	[124..1]

Back

Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVLTFLRF LGRGGAVTRG LPGGARCFGV RTSPTGEKVT HTGQVYDDGD YRKVRFVGRQ  60
   61 KEVNENFAID LIAEQPVSQV GSRVISCDGG GGALGHPRVY INLDKETKTG TCGYCGLQFR 120
  121 QQHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	2jvmA
Description:	No description for 2jvmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits