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View Structure Prediction Details

Protein: NULM_CAEBR, NU4L...
Organism: Caenorhabditis briggsae
Length: 76 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NULM_CAEBR, NU4L....

Description E-value Query
Range
Subject
Range
gi|27543262 - gi|27543262|gb|AAO16419.1| NADH dehydrogenase subunit 4L [Caenorhabditis elegans]
80.0 [0..1] [76..2]
gi|31873490, gi|... - gi|31873490|emb|CAD10442.2| NADH dehydrogenase subunit 4L [Necator americanus], gi|19111760|ref|NP_5...
80.0 [0..1] [76..2]
gi|18873634 - gi|18873634|emb|CAD10430.1| NADH dehydrogenase subunit 4L [Ancylostoma duodenale]
79.0 [0..1] [76..2]
gi|116177494, gi... - gi|116510832|ref|YP_817450.1| NADH dehydrogenase subunit 4L [Heterorhabditis bacteriophora], gi|1161...
78.0 [0..1] [76..3]
gi|66269527, gi|... - gi|91176187|ref|YP_537101.1| NADH dehydrogenase subunit 4L [Anisakis simplex], gi|66269527|gb|AAY431...
77.0 [0..1] [76..2]
NU4LM_ASCSU - NADH-ubiquinone oxidoreductase chain 4L OS=Ascaris suum GN=ND4L PE=3 SV=2
76.0 [0..1] [76..2]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLFVSLFMF IFKWQRLIFI LISLEFLMLS LFLKFSYLLS EMMFFYFMCF SVISSILGMV  60
   61 VMVGNMKFFG SDNCIF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.940 a.7.16 Description not found.
View Download 0.850 a.2.8 Eukaryotic DNA topoisomerase I, dispensable insert domain
View Download 0.850 a.2.8 Eukaryotic DNA topoisomerase I, dispensable insert domain
View Download 0.847 f.17.1 F1F0 ATP synthase subunit C
View Download 0.829 a.64.1 Saposin
View Download 0.816 a.239.1 Description not found.
View Download 0.795 a.64.1 Saposin
View Download 0.795 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle