YRC Public Data Repository - Protein Structure Prediction

Protein:	NU4LM_DANRE
Organism:	Danio rerio
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NU4LM_DANRE.

Description	E-value	Query Range	Subject Range
gi\|71658045, gi\|... - gi\|71658045\|ref\|YP_271997.1\| NADH dehydrogenase subunit 4L [Cobitis sinensis], gi\|44887484\|gb\|AAS480...	108.0	[0..1]	[98..1]
gi\|16266812, gi\|... - gi\|16357117\|ref\|NP_443484.1\| NADH dehydrogenase subunit 4L [Ijimaia dofleini], gi\|16266812\|dbj\|BAB70...	107.0	[0..1]	[98..1]
gi\|25057508, gi\|... - gi\|25057508\|ref\|NP_739680.1\| NADH dehydrogenase subunit 4L [Diplacanthopoma brachysoma], gi\|25005560...	106.0	[0..1]	[98..1]
gi\|16357046, gi\|... - gi\|16357046\|ref\|NP_443601.1\| NADH dehydrogenase subunit 4L [Beryx splendens], gi\|16267159\|dbj\|BAB702...	106.0	[0..1]	[98..1]
NU4LM_FORLA - NADH-ubiquinone oxidoreductase chain 4L OS=Formosania lacustris GN=MT-ND4L PE=3 SV=1	106.0	[0..1]	[98..1]
gi\|62184461, gi\|... - gi\|62184461\|ref\|YP_220610.1\| NADH dehydrogenase subunit 4L [Salanx ariakensis], gi\|58430882\|dbj\|BAD8...	106.0	[0..1]	[98..1]
gi\|25057494, gi\|... - gi\|25057494\|ref\|NP_739667.1\| NADH dehydrogenase subunit 4L [Cataetyx rubrirostris], gi\|25005546\|dbj\|...	106.0	[0..1]	[98..1]
gi\|21585739 - gi\|21585739\|gb\|AAM55521.1\| NADH dehydrogenase subunit 4L [Pimephales notatus]	106.0	[0..1]	[98..1]
gi\|4235582 - gi\|4235582\|gb\|AAD13272.1\| NADH dehydrogenase subunit 4L [Cyprinella gibbsi]	105.0	[0..1]	[98..1]
gi\|15430504, gi\|... - gi\|15451812\|ref\|NP_203735.1\| NADH dehydrogenase subunit 4L [Engraulis japonicus], gi\|15430504\|dbj\|BA...	105.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTHFSLNA AFMLGLAGLT FHRVHLLSAL LCLEGMMLSL FISMALWTLK TESMSLSTAP  60
   61 MLLLAFSACE ASAGLALLVA TARTHGSDHM KNLNLLQC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.853872
Match:	PF00420.15
Description:	No description for PF00420.15 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.990	N/A	N/A	a.7.12	Description not found.
View	Download	0.989	N/A	N/A	a.29.13	Description not found.
View	Download	0.989	N/A	N/A	a.29.13	Description not found.
View	Download	0.988	N/A	N/A	a.7.12	Description not found.
View	Download	0.987	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.985	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.985	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.966	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.963	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.961	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.950	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.945	N/A	N/A	a.7.8	GAT domain
View	Download	0.923	N/A	N/A	a.7.8	GAT domain
View	Download	0.897	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.761	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits