YRC Public Data Repository - Protein Structure Prediction

Protein:	NUDB_ECOLI
Organism:	Escherichia coli
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUDB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|33151785, gi\|... - gi\|33151785\|ref\|NP_873138.1\| dATP pyrophosphohydrolase [Haemophilus ducreyi 35000HP], gi\|33148006\|gb...	127.0	[0..1]	[150..1]
gi\|85059236, gi\|... - gi\|85059236\|ref\|YP_454938.1\| dATP pyrophosphohydrolase [Sodalis glossinidius str. 'morsitans'], gi\|8...	122.0	[0..5]	[148..2]
gi\|197362107, gi... - gi\|197362107\|ref\|YP_002141744.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica sero... gi\|56413181, gi\|... - gi\|56413181\|ref\|YP_150256.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar ...	121.0	[0..1]	[150..1]
gi\|205272175, gi... - gi\|205352394\|ref\|YP_002226195.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica sero... gi\|206708382, gi... - gi\|207856579\|ref\|YP_002243230.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=ntpA] [protein=dATP pyrophosphohydrolase] [protein_id=YP_005237864.1] [location=complement(200... gi\|197241881, gi... - gi\|197263626\|ref\|ZP_03163700.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serov... gi\|204930982, gi... - gi\|204930982\|ref\|ZP_03221808.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serov... gi\|194711487, gi... - gi\|194735985\|ref\|YP_002114935.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica sero... gi\|197251500, gi... - gi\|197251500\|ref\|YP_002146122.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica sero... gi\|194448668, gi... - gi\|194448668\|ref\|YP_002045953.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica sero... gi\|194472365, gi... - gi\|194472365\|ref\|ZP_03078349.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serov... gi\|195633921, gi... - gi\|195633921\|gb\|EDX52273.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar N... gi\|168820724, gi... - gi\|205342606\|gb\|EDZ29370.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar W... gi\|168241529, gi... - gi\|205339442\|gb\|EDZ26206.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar H... gi\|16420436, gi\|... - gi\|16765242\|ref\|NP_460857.1\| dATP pyrophosphohydrolase [Salmonella typhimurium LT2], gi\|16420436\|gb\|... gi\|205350551, gi... - gi\|205350551\|gb\|EDZ37182.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar H... gi\|205327906, gi... - gi\|205327906\|gb\|EDZ14670.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar 4... gi\|197288618, gi... - gi\|197288618\|gb\|EDY27993.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar S... gi\|205322892, gi... - gi\|205322892\|gb\|EDZ10731.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar S... gi\|62128111, gi\|... - gi\|62180478\|ref\|YP_216895.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar ... gi\|224468122, gi... - gi\|224583595\|ref\|YP_002637393.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica sero...	120.0	[0..1]	[150..1]
gi\|112822695, gi... - gi\|113460652\|ref\|YP_718718.1\| dATP pyrophosphohydrolase [Haemophilus somnus 129PT], gi\|112822695\|gb\|... gi\|168826174, gi... - gi\|46156589\|ref\|ZP_00132407.2\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	120.0	[0..6]	[145..3]
gi\|29141458, gi\|... - gi\|29141458\|ref\|NP_804800.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar ... gi\|16760850 - gi\|16760850\|ref\|NP_456467.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serovar ... gi\|25387498, gi\|... - gi\|25387498\|pir\|\|AH0743 DATP pyrophosphohydrolase (EC 3.6.1.-) [imported] - Salmonella enterica subs... gi\|213162206 - gi\|213162206\|ref\|ZP_03347916.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serov... gi\|213999592 - gi\|213999592\|ref\|ZP_03410327.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serov... gi\|213580155 - gi\|213580155\|ref\|ZP_03361981.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serov... gi\|213426399 - gi\|213426399\|ref\|ZP_03359149.1\| dATP pyrophosphohydrolase [Salmonella enterica subsp. enterica serov...	120.0	[0..1]	[150..1]
gi\|53733203 - gi\|53733203\|ref\|ZP_00156157.2\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	119.0	[0..6]	[146..4]
gi\|75511836 - gi\|75511836\|ref\|ZP_00734454.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	119.0	[0..1]	[150..20]
gi\|189355167, gi... - gi\|189402511\|ref\|ZP_02782906.2\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4401], gi... gi\|189010609, gi... - gi\|189010609\|ref\|ZP_02808172.2\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4076], gi... gi\|188017443, gi... - gi\|188024653\|ref\|ZP_02772914.2\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4113], gi... gi\|187776267, gi... - gi\|187776267\|ref\|ZP_02801595.2\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4196], gi... gi\|75195930 - gi\|75195930\|ref\|ZP_00706000.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|253324222, gi... - gi\|253773178\|ref\|YP_003036009.1\| NUDIX hydrolase [Escherichia coli BL21(DE3)], gi\|253324222\|gb\|ACT28... gi\|75175519 - gi\|75175519\|ref\|ZP_00695735.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|217328654, gi... - gi\|217328654\|ref\|ZP_03444735.1\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. TW14588], g... gi\|209399929, gi... - gi\|209399929\|ref\|YP_002270948.1\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4115], g... gi\|208738459, gi... - gi\|208818336\|ref\|ZP_03258656.1\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4042], gi... gi\|208816708, gi... - gi\|208816708\|ref\|ZP_03257828.1\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4045], gi... gi\|208810601, gi... - gi\|208810601\|ref\|ZP_03252477.1\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4206], gi... gi\|194439016, gi... - gi\|194439016\|ref\|ZP_03071099.1\| dATP pyrophosphohydrolase [Escherichia coli 101-1], gi\|194421975\|gb\|... tr\|A0A0G3HKI7\|A0... - Dihydroneopterin triphosphate pyrophosphatase protein OS=Escherichia coli (strain K12) GN=nudB PE=4 ... gi\|189405328, gi... - gi\|189405328\|ref\|ZP_02814737.2\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC869], gi\|... gi\|24113214, gi\|... - ref\|NP_707724.1\| dATP pyrophosphohydrolase [Shigella flexneri 2a str. 301], gb\|AAN43431.1\| dATP pyr... gi\|189404108, gi... - gi\|189404108\|ref\|ZP_02787348.2\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4501], gi... gi\|189403502, gi... - gi\|189403502\|ref\|ZP_02795855.2\| dATP pyrophosphohydrolase [Escherichia coli O157:H7 str. EC4486], gi...	118.0	[0..1]	[150..20]
gi\|192926305, gi... - gi\|75255880\|ref\|ZP_00727619.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	118.0	[0..1]	[150..20]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDKVYKRPV SILVVIYAQD TKRVLMLQRR DDPDFWQSVT GSVEEGETAP QAAMREVKEE  60
   61 VTIDVVAEQL TLIDCQRTVE FEIFSHLRHR YAPGVTRNTE SWFCLALPHE RQIVFTEHLA 120
  121 YKWLDAPAAA ALTKSWSNRQ AIEQFVINAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	2o1cA
Description:	No description for 2o1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits