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View Structure Prediction Details

Protein: NTF2_ORYSA
Organism: Oryza sativa
Length: 122 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NTF2_ORYSA.

Description E-value Query
Range
Subject
Range
gi|50746525 - gi|50746525|ref|XP_420536.1| PREDICTED: similar to KIAA0660 protein [Gallus gallus]
154.0 [0..2] [121..93]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDADAVAKAF VEHYYRTFDT NRPALVSLYQ DGSMLTFEGQ QFLGAAAIAG KLGSLPFAQC  60
   61 HHDINTVDCQ PSGPQGGMLV FVSGSLRTGP DEHPLKFSQM FQLLPAGGNF YVQNDMFRLN 120
  121 YG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.221849
Match: 1qmaA
Description: Nuclear transport factor-2 (NTF2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleic acid binding 0.688410645367506 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle